C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB1, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109602 Rab1-003 ENSMUSG00000020149 10090 + 11:20201435-20226850 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryENSMUST00000109602
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000109602 18.734±5.29 15.866±4.14 20.031±9.80 19.498±6.58 14.751±0.00 8.358±0.00 16.413±5.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ON CIL_0004ON_0002 CGP 11:20201432-20249429

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005794 IDA Golgi apparatus
GO:0006886 TAS intracellular protein transport
GO:0006888 ISA ER to Golgi vesicle-mediated transport
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000043002 rab1a-001 protein_coding Danio_rerio 0 276
ENST00000260569 CEP68-002 protein_coding Homo_sapiens 8.99999e-40 171
ENST00000377990 CEP68-001 protein_coding Homo_sapiens 1e-39 171
ENST00000398529 RAB1A-004 protein_coding Homo_sapiens 0 1356
ENST00000401856 RP1-263J7.2-001 processed_pseudogene Homo_sapiens 0 342
ENST00000409751 RAB1A-003 protein_coding Homo_sapiens 0 1561
ENST00000409784 RAB1A-001 protein_coding Homo_sapiens 0 1716
ENST00000409892 RAB1A-002 protein_coding Homo_sapiens 0 2093
ENST00000494188 RAB1A-005 processed_transcript Homo_sapiens 0 355

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