C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB1, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020358 Rab1-001 ENSMUSG00000020149 10090 + 11:20201432-20226856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020358
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020358 38.470±9.35 27.930±14.66 64.056±3.47 52.159±3.26 20.353±7.54 45.808±11.62 25.925±7.87 65.411±11.54 34.153±10.24 55.944±7.61 24.883±3.29 30.802±10.71 47.658±35.51 7.088±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ON CIL_0004ON_0002 CGP 11:20201432-20249429

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005794 IDA Golgi apparatus
GO:0006886 TAS intracellular protein transport
GO:0006888 ISA ER to Golgi vesicle-mediated transport
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000043002 rab1a-001 protein_coding Danio_rerio 0 538
ENST00000260569 CEP68-002 protein_coding Homo_sapiens 3.9937e-43 182
ENST00000342609 AC067945.3-001 processed_pseudogene Homo_sapiens 0 798
ENST00000377990 CEP68-001 protein_coding Homo_sapiens 5.00264e-43 182
ENST00000398529 RAB1A-004 protein_coding Homo_sapiens 0 1356
ENST00000401856 RP1-263J7.2-001 processed_pseudogene Homo_sapiens 0 483
ENST00000409751 RAB1A-003 protein_coding Homo_sapiens 0 1735
ENST00000409784 RAB1A-001 protein_coding Homo_sapiens 0 2405
ENST00000409892 RAB1A-002 protein_coding Homo_sapiens 0 1716
ENST00000494188 RAB1A-005 processed_transcript Homo_sapiens 0 355

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