C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 13 D (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036579 Vps13d-002 ENSMUSG00000020220 10090 - 4:144972622-145195005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000036579
Transcript ID Brain Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000036579 1.780±0.36 1.062±0.00 0.654±0.00 0.583±0.00 0.804±0.00 4.375±0.00 0.350±0.07 0.424±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MQ CIL_0003MQ_0002 CGP 4:144892827-145195005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000011700 VPS13D-014 protein_coding Homo_sapiens 0 11420
ENST00000460333 VPS13D-002 retained_intron Homo_sapiens 0 2782
ENST00000469054 VPS13D-009 processed_transcript Homo_sapiens 0 540
ENST00000476045 VPS13D-013 processed_transcript Homo_sapiens 0 366
ENST00000481484 VPS13D-011 processed_transcript Homo_sapiens 0 363
ENST00000487188 VPS13D-004 processed_transcript Homo_sapiens 0 2172
ENST00000489961 VPS13D-008 processed_transcript Homo_sapiens 0 339
ENST00000543710 VPS13D-005 processed_transcript Homo_sapiens 0 2278
ENST00000543766 VPS13D-006 protein_coding Homo_sapiens 0 865
ENST00000613099 VPS13D-003 protein_coding Homo_sapiens 0 9308
ENST00000620676 VPS13D-001 protein_coding Homo_sapiens 0 15270

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