C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: vacuolar protein sorting 13 D (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000130704 Vps13d-003 ENSMUSG00000020220 10090 - 4:144972626-145091950 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000130704
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000130704 3.339±0.42 3.007±0.63 1.682±0.36 3.505±1.86 3.064±0.69 2.524±0.08 1.548±0.49 2.623±0.41 4.763±0.00 0.679±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MQ CIL_0003MQ_0002 CGP 4:144892827-145195005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000011700 VPS13D-014 protein_coding Homo_sapiens 0 3773
ENST00000460333 VPS13D-002 retained_intron Homo_sapiens 0 1954
ENST00000476045 VPS13D-013 processed_transcript Homo_sapiens 0 366
ENST00000481484 VPS13D-011 processed_transcript Homo_sapiens 0 363
ENST00000543710 VPS13D-005 processed_transcript Homo_sapiens 0 2278
ENST00000543766 VPS13D-006 protein_coding Homo_sapiens 0 863
ENST00000613099 VPS13D-003 protein_coding Homo_sapiens 0 3773
ENST00000620676 VPS13D-001 protein_coding Homo_sapiens 0 3773

Loading