C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 13 D (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020441 Vps13d-001 ENSMUSG00000020220 10090 - 4:144972626-145190666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000020441
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000020441 2.620±0.14 2.917±0.45 1.509±0.00 1.232±0.32 2.431±1.15 2.916±1.09 1.852±0.18 1.825±0.70 0.879±0.50 1.426±0.38 3.207±0.85 0.566±0.36 0.535±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MQ CIL_0003MQ_0002 CGP 4:144892827-145195005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000011700 VPS13D-014 protein_coding Homo_sapiens 0 5827
ENST00000460333 VPS13D-002 retained_intron Homo_sapiens 0 3546
ENST00000469054 VPS13D-009 processed_transcript Homo_sapiens 0 540
ENST00000476045 VPS13D-013 processed_transcript Homo_sapiens 0 366
ENST00000481484 VPS13D-011 processed_transcript Homo_sapiens 0 363
ENST00000487188 VPS13D-004 processed_transcript Homo_sapiens 0 2170
ENST00000489961 VPS13D-008 processed_transcript Homo_sapiens 0 339
ENST00000543710 VPS13D-005 processed_transcript Homo_sapiens 0 2278
ENST00000543766 VPS13D-006 protein_coding Homo_sapiens 0 865
ENST00000613099 VPS13D-003 protein_coding Homo_sapiens 0 15080
ENST00000620676 VPS13D-001 protein_coding Homo_sapiens 0 9252

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