C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003MQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000044982-ENSDARG00000017986 CGP 7955 23:21957773-22057740
GeneTranscriptPositionBiotype
ENSDARG00000017986 (vps13d)
vacuolar protein sorting 13D (yeast) 		ENSDART00000046613 (vps13d-201) 21989578-22056249 protein_coding
ENSDART00000145408 (vps13d-002) 22044569-22057740 protein_coding
ENSDART00000148128 (vps13d-001) 21990702-22042947 protein_coding
ENSDARG00000044982 (dhrs3a)
dehydrogenase/reductase (SDR family) member 3a 		ENSDART00000066125 (dhrs3a-001) 21957773-21968821 protein_coding
ENSDARG00000094086 (si:ch211-145d10.5)
si:ch211-145d10.5 		ENSDART00000146572 (si:ch211-145d10.5-001) 21977918-21986565 lincRNA
CIL_0003MQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066026-ENSMUSG00000020220 CGP 10090 4:144892827-145195005
GeneTranscriptPositionBiotype
ENSMUSG00000020220 (Vps13d)
vacuolar protein sorting 13 D (yeast) 		ENSMUST00000020441 (Vps13d-001) 144972626-145190666 protein_coding
ENSMUST00000036579 (Vps13d-002) 144972622-145195005 protein_coding
ENSMUST00000097796 (Vps13d-201) 144972623-144974683 protein_coding
ENSMUST00000130704 (Vps13d-003) 144972626-145091950 nonsense_mediated_decay
ENSMUST00000132700 (Vps13d-004) 145176360-145194995 retained_intron
ENSMUST00000141208 (Vps13d-007) 144980298-145054143 retained_intron
ENSMUST00000142308 (Vps13d-008) 145052982-145058198 retained_intron
ENSMUST00000144835 (Vps13d-005) 145016759-145051034 processed_transcript
ENSMUST00000147511 (Vps13d-006) 144974926-144983961 processed_transcript
ENSMUST00000155670 (Vps13d-009) 145069968-145072602 retained_intron
ENSMUST00000185113 (Vps13d-010) 144974596-145155486 protein_coding
ENSMUSG00000066026 (Dhrs3)
dehydrogenase/reductase (SDR family) member 3 		ENSMUST00000084184 (Dhrs3-003) 144893219-144927639 nonsense_mediated_decay
ENSMUST00000105744 (Dhrs3-002) 144892827-144927642 protein_coding
ENSMUST00000128926 (Dhrs3-005) 144893131-144919972 processed_transcript
ENSMUST00000133265 (Dhrs3-006) 144918879-144919972 retained_intron
ENSMUST00000142808 (Dhrs3-004) 144893137-144919898 protein_coding
ENSMUST00000154208 (Dhrs3-001) 144893077-144928209 protein_coding
ENSMUST00000171001 (Dhrs3-201) 144892827-144927645 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MQ_0001ENSDARG00000017986ENSDART00000046613ENSDART00000145408ENSDART00000148128ENSDARG00000044982ENSDART00000066125ENSDARG00000094086ENSDART00000146572CIL_0003MQ_0002ENSMUSG00000020220ENSMUST00000020441ENSMUST00000036579ENSMUST00000097796ENSMUST00000130704ENSMUST00000132700ENSMUST00000141208ENSMUST00000142308ENSMUST00000144835ENSMUST00000147511ENSMUST00000155670ENSMUST00000185113ENSMUSG00000066026ENSMUST00000084184ENSMUST00000105744ENSMUST00000128926ENSMUST00000133265ENSMUST00000142808ENSMUST00000154208ENSMUST00000171001
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MQ_0001ENSDARG00000017986ENSDART00000046613ENSDART00000145408ENSDART00000148128ENSDARG00000044982ENSDART00000066125ENSDARG00000094086ENSDART00000146572CIL_0003MQ_0002ENSMUSG00000020220ENSMUST00000020441ENSMUST00000036579ENSMUST00000130704ENSMUST00000147511ENSMUST00000185113ENSMUSG00000066026ENSMUST00000084184ENSMUST00000105744ENSMUST00000142808ENSMUST00000154208ENSMUST00000171001
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017986 ENSDART00000046613 N/A N/A N/A 0.497±0.18 N/A N/A 1.984±1.08 2.573±0.07 0.412±0.00 N/A 0.439±0.00 N/A N/A N/A
ENSDART00000145408 N/A N/A N/A 2.353±0.47 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148128 N/A N/A N/A 2.726±1.59 N/A N/A 2.006±0.44 1.124±0.00 0.964±0.00 N/A 1.420±0.00 N/A N/A N/A
ENSDARG00000044982 ENSDART00000066125 N/A N/A N/A 3.050±0.40 N/A N/A 6.562±2.25 6.460±0.93 N/A N/A 0.709±0.00 N/A N/A N/A
ENSDARG00000094086 ENSDART00000146572 N/A N/A N/A 0.340±0.24 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020220 ENSMUST00000020441 2.620±0.14 2.917±0.45 1.509±0.00 1.232±0.32 2.431±1.15 2.916±1.09 1.852±0.18 1.825±0.70 0.879±0.50 1.426±0.38 N/A 3.207±0.85 0.566±0.36 0.535±0.24
ENSMUST00000036579 N/A N/A N/A 1.780±0.36 N/A N/A 1.062±0.00 0.654±0.00 0.583±0.00 N/A 0.804±0.00 4.375±0.00 0.350±0.07 0.424±0.13
ENSMUST00000097796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130704 3.339±0.42 3.007±0.63 N/A 1.682±0.36 3.505±1.86 N/A 3.064±0.69 2.524±0.08 1.548±0.49 N/A 2.623±0.41 4.763±0.00 0.679±0.24 N/A
ENSMUST00000132700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.913±2.32 N/A
ENSMUST00000155670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185113 4.395±0.26 5.572±1.50 2.454±0.00 1.891±0.26 4.253±1.03 5.730±1.22 2.614±0.24 2.617±0.88 1.594±0.65 3.453±0.52 1.735±0.36 4.947±1.40 1.166±0.64 1.131±0.31
ENSMUSG00000066026 ENSMUST00000084184 13.937±5.67 10.921±1.92 24.903±2.67 1.629±0.34 12.907±4.31 12.121±1.97 9.087±0.90 18.608±1.97 14.150±11.50 17.650±6.72 2.755±0.99 17.492±3.23 7.305±3.38 1.319±0.22
ENSMUST00000105744 N/A N/A N/A 15.522±0.00 N/A N/A N/A N/A N/A N/A N/A 72.272±0.00 36.497±9.06 2.506±0.00
ENSMUST00000128926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142808 N/A N/A N/A 3.779±0.00 N/A N/A N/A N/A N/A N/A N/A 30.623±0.00 9.196±2.48 0.650±0.00
ENSMUST00000154208 11.979±3.45 5.719±0.00 12.578±0.50 0.681±0.00 8.071±1.38 4.082±0.66 10.487±0.06 22.948±6.35 9.692±10.38 9.417±0.82 1.129±0.25 5.037±0.00 3.090±0.32 N/A
ENSMUST00000171001 78.450±29.65 51.900±14.44 71.295±3.28 3.833±1.36 63.160±11.50 26.765±5.22 32.403±1.72 107.665±14.05 37.430±26.61 58.667±13.05 4.907±0.98 54.939±27.02 13.954±3.26 2.872±0.73

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