C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) polymerase gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102863 Papolg-002 ENSMUSG00000020273 10090 - 11:23870056-23895236 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000102863
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000102863 1.464±0.00 2.759±0.00 1.181±0.30 3.211±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PG CIL_0008PG_0002 VISTA 11:23715166-24317101
CIL_0004OR CIL_0004OR_0002 CGP 11:23741514-23895253
CIL_0009DA CIL_0009DA_0002 VISTA 11:23762086-24363576
CIL_0008GM CIL_0008GM_0002 VISTA 11:23795054-24396665

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004652 IBA polynucleotide adenylyltransferase activity
GO:0005634 IBA nucleus
GO:0006378 IBA mRNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238714 PAPOLG-001 protein_coding Homo_sapiens 0 2150
ENST00000412217 PAPOLG-005 protein_coding Homo_sapiens 0 457
ENST00000414060 PAPOLG-003 nonsense_mediated_decay Homo_sapiens 0 1243
ENST00000453839 PAPOLG-004 nonsense_mediated_decay Homo_sapiens 0 1044
ENST00000483370 PAPOLG-008 processed_transcript Homo_sapiens 0 673
ENST00000496283 PAPOLG-002 retained_intron Homo_sapiens 0 1044

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