C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) polymerase gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020513 Papolg-001 ENSMUSG00000020273 10090 - 11:23862646-23895253 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020513
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020513 1.467±0.47 3.102±0.32 7.379±1.12 2.068±0.28 1.591±0.45 1.368±0.48 1.406±0.36 1.791±0.60 2.563±0.57 0.961±0.22 3.582±0.62 2.634±0.30 2.740±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PG CIL_0008PG_0002 VISTA 11:23715166-24317101
CIL_0004OR CIL_0004OR_0002 CGP 11:23741514-23895253
CIL_0009DA CIL_0009DA_0002 VISTA 11:23762086-24363576
CIL_0008GM CIL_0008GM_0002 VISTA 11:23795054-24396665

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004652 IBA:ISS polynucleotide adenylyltransferase activity
GO:0005524 IEA ATP binding
GO:0005634 IBA:ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006378 IBA mRNA polyadenylation
GO:0016020 IEA membrane
GO:0043631 ISS RNA polyadenylation
GO:0046872 ISS metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000238714 PAPOLG-001 protein_coding Homo_sapiens 0 4458
ENST00000412217 PAPOLG-005 protein_coding Homo_sapiens 0 1498
ENST00000414060 PAPOLG-003 nonsense_mediated_decay Homo_sapiens 0 2867
ENST00000453839 PAPOLG-004 nonsense_mediated_decay Homo_sapiens 0 1415
ENST00000470208 PAPOLG-007 retained_intron Homo_sapiens 0 346
ENST00000483370 PAPOLG-008 processed_transcript Homo_sapiens 0 673
ENST00000496283 PAPOLG-002 retained_intron Homo_sapiens 0 1792

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