C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic polyadenylation element binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109412 Cpeb4-001 ENSMUSG00000020300 10090 + 11:31872226-31935634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000109412
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000109412 3.603±1.74 5.634±1.34 1.793±0.13 5.356±3.53 3.579±0.62 4.365±1.81 4.515±0.87 8.116±3.22 8.080±5.75 5.985±0.84 2.116±0.61 2.789±0.03 0.997±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DQ CIL_0002DQ_0002 CGP 11:31665181-31935634
CIL_0002DR CIL_0002DR_0002 CGP 11:31872211-31979651

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IDA RNA binding
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127580 CPEB4-201 protein_coding Danio_rerio 0 370
ENST00000265085 CPEB4-001 protein_coding Homo_sapiens 0 6360
ENST00000265997 CPEB3-002 protein_coding Homo_sapiens 0 577
ENST00000334035 CPEB4-002 protein_coding Homo_sapiens 0 8141
ENST00000412050 CPEB3-001 protein_coding Homo_sapiens 0 582
ENST00000517880 CPEB4-006 protein_coding Homo_sapiens 0 1618
ENST00000518141 CPEB4-009 processed_transcript Homo_sapiens 0 296
ENST00000519152 CPEB4-008 protein_coding Homo_sapiens 0 407
ENST00000519467 CPEB4-010 processed_transcript Homo_sapiens 0 1655
ENST00000519835 CPEB4-004 protein_coding Homo_sapiens 0 2665
ENST00000520867 CPEB4-003 protein_coding Homo_sapiens 0 3118
ENST00000522336 CPEB4-005 protein_coding Homo_sapiens 0 1615
ENST00000522344 CPEB4-007 retained_intron Homo_sapiens 0 411
ENST00000614585 CPEB3-201 protein_coding Homo_sapiens 0 577

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