C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic polyadenylation element binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020543 Cpeb4-201 ENSMUSG00000020300 10090 + 11:31872211-31931577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000020543
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000020543 2.640±0.85 2.951±1.23 1.649±0.38 3.146±1.23 2.249±0.00 4.620±1.91 3.049±0.00 3.756±1.87 1.760±0.88 9.408±3.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DQ CIL_0002DQ_0002 CGP 11:31665181-31935634
CIL_0002DR CIL_0002DR_0002 CGP 11:31872211-31979651

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002931 IDA response to ischemia
GO:0003723 IDA RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0014069 IDA postsynaptic density
GO:0030425 IDA dendrite
GO:0035235 ISS ionotropic glutamate receptor signaling pathway
GO:0036294 ISS cellular response to decreased oxygen levels
GO:0042149 ISS cellular response to glucose starvation
GO:0043524 ISS negative regulation of neuron apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0045202 IDA synapse
GO:0071230 ISS cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127580 CPEB4-201 protein_coding Danio_rerio 0 370
ENST00000265085 CPEB4-001 protein_coding Homo_sapiens 0 3301
ENST00000265997 CPEB3-002 protein_coding Homo_sapiens 0 577
ENST00000334035 CPEB4-002 protein_coding Homo_sapiens 0 1788
ENST00000412050 CPEB3-001 protein_coding Homo_sapiens 0 582
ENST00000517880 CPEB4-006 protein_coding Homo_sapiens 0 1395
ENST00000518141 CPEB4-009 processed_transcript Homo_sapiens 0 296
ENST00000519152 CPEB4-008 protein_coding Homo_sapiens 0 568
ENST00000519467 CPEB4-010 processed_transcript Homo_sapiens 0 1432
ENST00000519835 CPEB4-004 protein_coding Homo_sapiens 0 1797
ENST00000520867 CPEB4-003 protein_coding Homo_sapiens 0 1797
ENST00000522336 CPEB4-005 protein_coding Homo_sapiens 0 1482
ENST00000522344 CPEB4-007 retained_intron Homo_sapiens 0 414
ENST00000614585 CPEB3-201 protein_coding Homo_sapiens 0 577

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