C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, beta 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107561 Cacnb1-003 ENSMUSG00000020882 10090 - 11:98004747-98018372 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastMuscleENSMUST00000107561
Transcript ID Breast Muscle
ENSMUST00000107561 14.942±0.75 47.355±10.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_0000TK CIL_0000TK_0003 CGP 11:97989578-98023034
CIL_0000TJ CIL_0000TJ_0003 CGP 11:98001508-98030492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006612 IMP protein targeting to membrane
GO:0006816 IMP calcium ion transport
GO:0008331 IGI high voltage-gated calcium channel activity
GO:0016529 IDA sarcoplasmic reticulum
GO:0030315 IDA T-tubule
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130611 cacnb1-002 protein_coding Danio_rerio 0 558
ENSDART00000111707 cacnb1-001 protein_coding Danio_rerio 0 536
ENSDART00000123068 cacnb1-202 protein_coding Danio_rerio 0 534
ENSDART00000057159 cacnb1-003 protein_coding Danio_rerio 0 512
ENSDART00000087280 cacnb3a-001 protein_coding Danio_rerio 0 316
ENST00000301050 CACNB3-001 protein_coding Homo_sapiens 0 315
ENST00000344140 CACNB1-002 protein_coding Homo_sapiens 0 1984
ENST00000394303 CACNB1-001 protein_coding Homo_sapiens 0 963
ENST00000394310 CACNB1-004 protein_coding Homo_sapiens 0 1092
ENST00000492737 CACNB1-003 processed_transcript Homo_sapiens 0 606
ENST00000536187 CACNB3-004 protein_coding Homo_sapiens 0 315
ENST00000536613 CACNB1-012 retained_intron Homo_sapiens 0 758
ENST00000539338 CACNB1-005 retained_intron Homo_sapiens 0 963
ENST00000540990 CACNB3-002 protein_coding Homo_sapiens 0 315
ENST00000547230 CACNB3-018 protein_coding Homo_sapiens 0 315
ENST00000547392 CACNB3-006 protein_coding Homo_sapiens 0 263
ENST00000547818 CACNB3-015 protein_coding Homo_sapiens 0 259
ENST00000548860 CACNB3-005 retained_intron Homo_sapiens 0 315
ENST00000550483 CACNB3-023 nonsense_mediated_decay Homo_sapiens 6e-19 99
ENST00000551544 CACNB3-019 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000552480 CACNB3-021 retained_intron Homo_sapiens 2e-30 137
ENST00000577582 CACNB1-011 processed_transcript Homo_sapiens 0 324
ENST00000582877 CACNB1-009 processed_transcript Homo_sapiens 0 606
ENST00000622445 CACNB1-201 protein_coding Homo_sapiens 0 963

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