C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007317 Krt19-001 ENSMUSG00000020911 10090 - 11:100140810-100146120 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007317
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007317 59.220±52.86 1.917±0.62 290.828±73.54 1.101±0.80 265.645±122.19 2094.027±417.78 6.997±4.78 6.954±2.28 1.599±1.17 126.852±25.36 0.205±0.09 155.023±59.72 404.386±194.48 2.229±2.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_0017 CGP 11:100131758-100148665
CIL_0000TN CIL_0000TN_0006 CGP 11:100140810-100193246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005882 IEA intermediate filament
GO:0008307 IEA structural constituent of muscle
GO:0016010 IEA dystrophin-associated glycoprotein complex
GO:0030018 IDA Z disc
GO:0032403 IEA protein complex binding
GO:0042383 IDA sarcolemma
GO:0043034 IEA costamere
GO:0043627 IEA response to estrogen
GO:0045214 IEA sarcomere organization
GO:0060706 IGI cell differentiation involved in embryonic placenta development
GO:0070062 IEA extracellular vesicular exosome
GO:0071944 ISO cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167586 KRT14-001 protein_coding Homo_sapiens 0 534
ENST00000246635 KRT13-001 protein_coding Homo_sapiens 0 566
ENST00000251646 KRT33B-001 protein_coding Homo_sapiens 0 198
ENST00000254043 KRT15-001 protein_coding Homo_sapiens 0 542
ENST00000300992 KRT17P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 534
ENST00000301653 KRT16-001 protein_coding Homo_sapiens 0 473
ENST00000311208 KRT17-001 protein_coding Homo_sapiens 0 597
ENST00000326333 KRT17P2-002 processed_transcript Homo_sapiens 0 291
ENST00000332088 KRT17P5-001 transcribed_unprocessed_pseudogene Homo_sapiens 3e-22 110
ENST00000336861 KRT13-002 protein_coding Homo_sapiens 0 566
ENST00000361566 KRT19-001 protein_coding Homo_sapiens 0 1120
ENST00000393974 KRT15-004 protein_coding Homo_sapiens 0 361
ENST00000393976 KRT15-007 protein_coding Homo_sapiens 0 542
ENST00000398469 KRT42P-002 processed_transcript Homo_sapiens 0.000000002 69
ENST00000399124 KRT16P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 366
ENST00000399211 KRT17P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 553
ENST00000405746 KRT19P1-001 processed_pseudogene Homo_sapiens 0 850
ENST00000414673 KRT16P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 383
ENST00000417510 KRT16P6-002 processed_transcript Homo_sapiens 0 311
ENST00000420566 KRT17P3-001 unprocessed_pseudogene Homo_sapiens 0 556
ENST00000425692 KRT16P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 425
ENST00000438131 KRT42P-001 processed_transcript Homo_sapiens 0.000000002 69
ENST00000439127 KRT16P3-001 transcribed_unprocessed_pseudogene Homo_sapiens 5e-27 126
ENST00000441550 KRT14-002 retained_intron Homo_sapiens 7e-20 102
ENST00000443208 KRT19P4-001 processed_pseudogene Homo_sapiens 0 486
ENST00000444070 KRT17P5-003 processed_transcript Homo_sapiens 1e-21 110
ENST00000445433 KRT17P5-002 processed_transcript Homo_sapiens 9e-22 110
ENST00000451704 KRT17P7-001 transcribed_unprocessed_pseudogene Homo_sapiens 4e-22 110
ENST00000453795 KRT17P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 246
ENST00000455635 KRT19-002 protein_coding Homo_sapiens 0 350
ENST00000458290 KRT15-006 protein_coding Homo_sapiens 0 278
ENST00000458343 KRT42P-003 transcribed_unprocessed_pseudogene Homo_sapiens 0.0000000004 69
ENST00000463128 KRT17-002 protein_coding Homo_sapiens 0 412
ENST00000463447 KRT15-005 retained_intron Homo_sapiens 0 255
ENST00000464634 KRT13-006 nonsense_mediated_decay Homo_sapiens 0 542
ENST00000468313 KRT13-003 retained_intron Homo_sapiens 0 542
ENST00000468880 KRT19-005 retained_intron Homo_sapiens 0 440
ENST00000470004 KRT15-003 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000474031 KRT15-008 retained_intron Homo_sapiens 0 361
ENST00000476662 KRT14-003 retained_intron Homo_sapiens 0 348
ENST00000479031 KRT19-004 retained_intron Homo_sapiens 0 268
ENST00000493253 KRT17-003 retained_intron Homo_sapiens 0 433
ENST00000497016 KRT15-002 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000507547 KRT19P3-001 processed_pseudogene Homo_sapiens 0 568
ENST00000510337 KRT18P16-001 processed_pseudogene Homo_sapiens 0.0000000008 69
ENST00000540235 KRT17-201 protein_coding Homo_sapiens 0 505
ENST00000540749 KRT17P8-001 processed_pseudogene Homo_sapiens 0 359
ENST00000570596 KRT33B-001 protein_coding Homo_sapiens 0 198
ENST00000577449 KRT17P1-005 retained_intron Homo_sapiens 0 370
ENST00000577750 KRT16P1-005 retained_intron Homo_sapiens 0.000000000000001 88
ENST00000577817 KRT17-005 protein_coding Homo_sapiens 9.80909e-45 183
ENST00000579062 KRT16P2-002 processed_transcript Homo_sapiens 0 209
ENST00000579679 KRT17P5-006 processed_transcript Homo_sapiens 2e-22 110
ENST00000579946 KRT17P4-002 retained_intron Homo_sapiens 1e-21 110
ENST00000580621 KRT16P3-002 retained_intron Homo_sapiens 7e-17 94
ENST00000581013 KRT17P6-002 processed_transcript Homo_sapiens 0 226
ENST00000581027 KRT16P1-003 processed_transcript Homo_sapiens 0 298
ENST00000581146 KRT17P2-004 retained_intron Homo_sapiens 4.00001e-41 172
ENST00000582047 KRT17P1-004 retained_intron Homo_sapiens 3.00004e-41 172
ENST00000582224 KRT17P1-002 retained_intron Homo_sapiens 0 255
ENST00000582261 KRT17P7-002 processed_transcript Homo_sapiens 9e-22 110
ENST00000583364 KRT17P7-003 processed_transcript Homo_sapiens 2e-22 110
ENST00000583748 KRT16P6-003 processed_transcript Homo_sapiens 1.99965e-42 176
ENST00000584135 KRT16P1-004 processed_transcript Homo_sapiens 0 209
ENST00000584481 KRT16P6-004 processed_transcript Homo_sapiens 6e-29 132
ENST00000584759 KRT16P3-003 retained_intron Homo_sapiens 3e-17 94
ENST00000584769 KRT17P2-003 processed_transcript Homo_sapiens 0 333
ENST00000584962 KRT16P1-002 retained_intron Homo_sapiens 0 309
ENST00000587544 KRT13-005 protein_coding Homo_sapiens 0 566
ENST00000590038 KRT17-006 protein_coding Homo_sapiens 0 294
ENST00000590425 KRT13-007 protein_coding Homo_sapiens 0 357
ENST00000593067 KRT16-003 protein_coding Homo_sapiens 0 355
ENST00000593096 KRT19-007 protein_coding Homo_sapiens 0 682
ENST00000620421 KRT33B-201 protein_coding Homo_sapiens 0 198

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