C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulon 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137990 Rtn1-003 ENSMUSG00000021087 10090 - 12:72212289-72236724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverMuscleENSMUST00000137990
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Muscle
ENSMUST00000137990 0.469±0.13 5.258±2.78 0.367±0.00 229.385±9.39 3.485±0.49 0.951±0.63 1.553±0.00 1.049±0.00 0.142±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S5 CIL_0000S5_0002 CGP 12:72101292-72409054
CIL_0005ZY CIL_0005ZY_0003 CGP 12:72211752-72514334

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267484 RTN1-001 protein_coding Homo_sapiens 0 865
ENST00000342503 RTN1-002 protein_coding Homo_sapiens 0 1074
ENST00000395090 RTN1-003 protein_coding Homo_sapiens 0 865
ENST00000432103 RTN1-009 retained_intron Homo_sapiens 0 865
ENST00000474911 RTN1-004 retained_intron Homo_sapiens 0 865
ENST00000481205 RTN1-005 retained_intron Homo_sapiens 0 422
ENST00000490111 RTN1-006 retained_intron Homo_sapiens 0 281
ENST00000557422 RTN1-008 processed_transcript Homo_sapiens 0 475
ENST00000611068 RTN1-201 protein_coding Homo_sapiens 0 865

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