C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulon 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078505 Rtn1-001 ENSMUSG00000021087 10090 - 12:72211752-72409054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078505
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078505 0.747±0.24 2.413±0.24 0.659±0.09 42.800±11.93 2.239±0.56 1.513±0.28 0.456±0.14 1.061±0.18 0.335±0.12 3.850±0.23 0.125±0.04 11.955±2.83 9.376±5.93 7.184±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S5 CIL_0000S5_0002 CGP 12:72101292-72409054
CIL_0005ZY CIL_0005ZY_0003 CGP 12:72211752-72514334

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030182 IEA neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267484 RTN1-001 protein_coding Homo_sapiens 0 2499
ENST00000342503 RTN1-002 protein_coding Homo_sapiens 0 876
ENST00000395090 RTN1-003 protein_coding Homo_sapiens 0 878
ENST00000432103 RTN1-009 retained_intron Homo_sapiens 0 1419
ENST00000474911 RTN1-004 retained_intron Homo_sapiens 0 878
ENST00000481205 RTN1-005 retained_intron Homo_sapiens 0 503
ENST00000490111 RTN1-006 retained_intron Homo_sapiens 0 281
ENST00000557422 RTN1-008 processed_transcript Homo_sapiens 0 303
ENST00000611068 RTN1-201 protein_coding Homo_sapiens 0 2163

Loading