C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPARC related modular calcium binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021564 Smoc1-002 ENSMUSG00000021136 10090 + 12:81026828-81186410 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021564
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021564 45.850±20.65 3.794±0.17 9.095±3.26 17.230±5.88 0.766±0.00 2.395±0.57 0.740±0.11 10.222±4.18 1.503±0.51 0.360±0.17 17.174±12.53 11.540±6.71 1.497±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000U1 CIL_0000U1_0002 CGP 12:80953185-81186414
CIL_0002M6 CIL_0002M6_0002 CGP 12:81026808-81333180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005604 IDA basement membrane
GO:0007165 IEA signal transduction
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030198 IDA extracellular matrix organization
GO:0050840 IDA extracellular matrix binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361956 SMOC1-001 protein_coding Homo_sapiens 0 1746
ENST00000381280 SMOC1-002 protein_coding Homo_sapiens 0 1748
ENST00000553839 SMOC1-003 retained_intron Homo_sapiens 0 593
ENST00000555917 SMOC1-005 processed_transcript Homo_sapiens 0 215

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