C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPARC related modular calcium binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110347 Smoc1-001 ENSMUSG00000021136 10090 + 12:81026808-81186414 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000110347
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000110347 6.378±1.59 88.171±57.18 0.654±0.10 3.038±0.24 20.214±5.67 0.976±0.36 0.564±0.13 0.455±0.22 6.479±4.82 1.161±0.71 0.236±0.10 19.414±9.51 4.882±3.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000U1 CIL_0000U1_0002 CGP 12:80953185-81186414
CIL_0002M6 CIL_0002M6_0002 CGP 12:81026808-81333180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001654 IMP eye development
GO:0005509 IEA calcium ion binding
GO:0005604 IDA basement membrane
GO:0007165 IEA signal transduction
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030154 IEA cell differentiation
GO:0030198 IDA extracellular matrix organization
GO:0045667 IEA regulation of osteoblast differentiation
GO:0050840 IDA extracellular matrix binding
GO:0060173 IMP limb development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361956 SMOC1-001 protein_coding Homo_sapiens 0 974
ENST00000381280 SMOC1-002 protein_coding Homo_sapiens 0 976
ENST00000553839 SMOC1-003 retained_intron Homo_sapiens 0 592
ENST00000555917 SMOC1-005 processed_transcript Homo_sapiens 0 215

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