C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPARC related modular calcium binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129362 Smoc1-003 ENSMUSG00000021136 10090 + 12:81026828-81186410 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000129362
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000129362 11.400±4.37 0.389±0.19 0.769±0.41 0.734±0.25 6.932±0.00 0.970±0.16 0.210±0.00 13.803±4.50 1.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000U1 CIL_0000U1_0002 CGP 12:80953185-81186414
CIL_0002M6 CIL_0002M6_0002 CGP 12:81026808-81333180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005604 IDA basement membrane
GO:0007165 IEA signal transduction
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030198 IDA extracellular matrix organization
GO:0050840 IDA extracellular matrix binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361956 SMOC1-001 protein_coding Homo_sapiens 0 2104
ENST00000381280 SMOC1-002 protein_coding Homo_sapiens 0 2089
ENST00000553839 SMOC1-003 retained_intron Homo_sapiens 0 593
ENST00000555917 SMOC1-005 processed_transcript Homo_sapiens 0 215

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