C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribonuclease P 40 subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021418 Rpp40 10090 - 13:35893472-35906359 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000171686 Rpp40-001 35893472-35906359 protein_coding
  ENSMUST00000174230 Rpp40-002 35896715-35906344 protein_coding
  ENSMUST00000174231 Rpp40-004 35896704-35898868 protein_coding
  ENSMUST00000174852 Rpp40-003 35896712-35906328 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171686ENSMUST00000174230ENSMUST00000174231ENSMUST00000174852
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171686 0.275±0.11 0.419±0.18 0.363±0.02 0.300±0.03 0.241±0.04 0.147±0.05 0.134±0.03 0.194±0.04 0.183±0.06 0.104±0.00 0.668±0.07 0.622±0.23 0.339±0.21 0.296±0.14
ENSMUST00000174230 4.109±0.65 4.597±0.61 2.381±0.51 1.082±0.33 2.795±0.56 1.553±0.57 1.639±0.35 3.407±0.40 3.203±0.65 1.592±0.23 2.812±0.43 5.181±1.94 4.177±2.79 1.958±0.86
ENSMUST00000174231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.784±0.00 N/A N/A
ENSMUST00000174852 0.355±0.11 0.333±0.00 0.311±0.03 0.254±0.06 0.429±0.13 0.250±0.08 0.120±0.01 N/A 0.226±0.05 0.146±0.01 0.197±0.05 0.529±0.22 0.343±0.20 0.199±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000162 CIL_000162_0003 CGP 13:35659862-35906359
CIL_0003SE CIL_0003SE_0002 CGP 13:35893472-35970388

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001682 ISO tRNA 5'-leader removal
GO:0004526 ISO ribonuclease P activity
GO:0005655 ISO nucleolar ribonuclease P complex
GO:0090501 ISO RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017605 rpp40 ribonuclease P 40 subunit protein_coding Danio_rerio
ENSG00000124787 RPP40 ribonuclease P/MRP 40kDa subunit protein_coding Homo_sapiens

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