C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonuclease P 40 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171686 Rpp40-001 ENSMUSG00000021418 10090 - 13:35893472-35906359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171686
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171686 0.275±0.11 0.419±0.18 0.363±0.02 0.300±0.03 0.241±0.04 0.147±0.05 0.134±0.03 0.194±0.04 0.183±0.06 0.104±0.00 0.668±0.07 0.622±0.23 0.339±0.21 0.296±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000162 CIL_000162_0003 CGP 13:35659862-35906359
CIL_0003SE CIL_0003SE_0002 CGP 13:35893472-35970388

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001682 ISO tRNA 5'-leader removal
GO:0004526 ISO ribonuclease P activity
GO:0005655 ISO nucleolar ribonuclease P complex
GO:0090501 ISO RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319533 RPP40-002 protein_coding Homo_sapiens 0 725
ENST00000380051 RPP40-001 protein_coding Homo_sapiens 0 1092
ENST00000464646 RPP40-006 protein_coding Homo_sapiens 0 965
ENST00000618533 RPP40-201 protein_coding Homo_sapiens 0 490

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