C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003SE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124787-ENSG00000219607 CGP 9606 6:4994732-5089487
GeneTranscriptPositionBiotype
ENSG00000124787 (RPP40)
ribonuclease P/MRP 40kDa subunit 		ENST00000319533 (RPP40-002) 4995047-5004036 protein_coding
ENST00000380051 (RPP40-001) 4994732-5004047 protein_coding
ENST00000464646 (RPP40-006) 4995078-5003658 protein_coding
ENST00000468105 (RPP40-004) 4998688-5004047 retained_intron
ENST00000479782 (RPP40-005) 4998828-5004018 nonsense_mediated_decay
ENST00000483546 (RPP40-003) 5001776-5004063 retained_intron
ENST00000618533 (RPP40-201) 4995049-5004063 protein_coding
ENSG00000219607 (PPP1R3G)
protein phosphatase 1, regulatory subunit 3G 		ENST00000405617 (PPP1R3G-001) 5084581-5089487 protein_coding
ENSG00000220685 (RP11-530A18.1)
 ENST00000405549 (RP11-530A18.1-001) 5065795-5066982 processed_pseudogene
ENSG00000271978 (RP11-428J1.4)
 ENST00000606227 (RP11-428J1.4-001) 5031756-5054423 lincRNA
ENSG00000272142 (RP11-428J1.5)
 ENST00000606761 (RP11-428J1.5-001) 5029972-5043449 lincRNA
ENST00000606767 (RP11-428J1.5-003) 5030076-5031125 lincRNA
ENST00000607327 (RP11-428J1.5-002) 5030031-5042940 lincRNA
CIL_0003SE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021418-ENSMUSG00000050423 CGP 10090 13:35893472-35970388
GeneTranscriptPositionBiotype
ENSMUSG00000021418 (Rpp40)
ribonuclease P 40 subunit 		ENSMUST00000171686 (Rpp40-001) 35893472-35906359 protein_coding
ENSMUST00000174230 (Rpp40-002) 35896715-35906344 protein_coding
ENSMUST00000174231 (Rpp40-004) 35896704-35898868 protein_coding
ENSMUST00000174852 (Rpp40-003) 35896712-35906328 retained_intron
ENSMUSG00000050423 (Ppp1r3g)
protein phosphatase 1, regulatory (inhibitor) subunit 3G 		ENSMUST00000132661 (Ppp1r3g-001) 35967853-35970388 protein_coding
ENSMUST00000172766 (Ppp1r3g-002) 35958839-35968324 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SE_0001ENSG00000124787ENST00000319533ENST00000380051ENST00000464646ENST00000468105ENST00000479782ENST00000483546ENST00000618533ENSG00000219607ENST00000405617ENSG00000220685ENST00000405549ENSG00000271978ENST00000606227ENSG00000272142ENST00000606761ENST00000606767ENST00000607327CIL_0003SE_0002ENSMUSG00000021418ENSMUST00000171686ENSMUST00000174230ENSMUST00000174231ENSMUST00000174852ENSMUSG00000050423ENSMUST00000132661ENSMUST00000172766
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SE_0001ENSG00000124787ENST00000319533ENST00000380051ENST00000464646ENST00000468105ENST00000479782ENST00000618533ENSG00000219607ENST00000405617ENSG00000220685ENST00000405549ENSG00000271978ENST00000606227ENSG00000272142ENST00000606761ENST00000606767ENST00000607327CIL_0003SE_0002ENSMUSG00000021418ENSMUST00000171686ENSMUST00000174230ENSMUST00000174231ENSMUST00000174852ENSMUSG00000050423ENSMUST00000132661ENSMUST00000172766
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124787 ENST00000319533 1.234±0.00 2.395±0.00 N/A 0.707±0.00 1.209±0.00 0.469±0.15 N/A 1.073±0.00 1.237±0.00 N/A N/A 0.648±0.02 0.948±0.02 1.064±0.00
ENST00000380051 N/A N/A N/A 0.091±0.00 N/A N/A 0.037±0.00 N/A 0.625±0.00 0.146±0.00 N/A 0.370±0.00 N/A 0.256±0.00
ENST00000464646 N/A N/A 0.986±0.00 N/A 0.738±0.08 N/A 0.053±0.00 0.305±0.00 N/A 0.267±0.00 N/A 0.853±0.28 0.405±0.11 0.817±0.41
ENST00000468105 N/A N/A N/A 1.216±0.00 N/A 0.872±0.00 N/A N/A 0.764±0.00 N/A N/A N/A N/A N/A
ENST00000479782 N/A N/A N/A N/A N/A 0.862±0.43 N/A 0.291±0.00 N/A N/A N/A 1.744±0.03 0.932±0.00 N/A
ENST00000483546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618533 0.518±0.00 1.334±0.00 N/A 0.448±0.08 0.792±0.18 0.665±0.00 0.333±0.18 0.591±0.00 1.375±0.00 0.551±0.06 0.557±0.47 1.882±1.27 1.429±0.45 2.120±0.52
ENSG00000219607 ENST00000405617 0.872±0.00 0.362±0.00 0.118±0.00 0.400±0.00 0.362±0.29 0.767±0.42 1.065±0.65 0.603±0.35 0.311±0.20 0.116±0.05 0.113±0.01 0.323±0.13 0.971±0.35 0.435±0.34
ENSG00000220685 ENST00000405549 0.010±0.00 0.070±0.00 0.232±0.00 0.062±0.03 0.076±0.00 0.127±0.00 0.122±0.00 0.206±0.00 0.112±0.00 N/A 0.124±0.00 0.074±0.02 0.032±0.01 0.048±0.01
ENSG00000271978 ENST00000606227 0.067±0.00 1.595±0.00 N/A 0.225±0.22 0.120±0.01 0.069±0.06 0.035±0.03 0.050±0.00 0.081±0.02 0.053±0.02 0.053±0.01 0.148±0.08 0.076±0.01 0.170±0.00
ENSG00000272142 ENST00000606761 N/A N/A N/A 0.095±0.06 0.318±0.00 0.621±0.00 0.153±0.00 0.201±0.00 0.178±0.12 0.300±0.07 0.290±0.00 0.258±0.12 0.207±0.00 2.162±0.91
ENST00000606767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.214±0.00 0.102±0.00 1.560±0.00
ENST00000607327 0.396±0.00 N/A N/A N/A 0.402±0.09 0.496±0.00 0.154±0.00 0.589±0.00 0.752±0.00 N/A 0.280±0.00 0.576±0.13 0.074±0.00 2.795±0.59
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021418 ENSMUST00000171686 0.275±0.11 0.419±0.18 0.363±0.02 0.300±0.03 0.241±0.04 0.147±0.05 0.134±0.03 0.194±0.04 0.183±0.06 0.104±0.00 0.668±0.07 0.622±0.23 0.339±0.21 0.296±0.14
ENSMUST00000174230 4.109±0.65 4.597±0.61 2.381±0.51 1.082±0.33 2.795±0.56 1.553±0.57 1.639±0.35 3.407±0.40 3.203±0.65 1.592±0.23 2.812±0.43 5.181±1.94 4.177±2.79 1.958±0.86
ENSMUST00000174231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.784±0.00 N/A N/A
ENSMUST00000174852 0.355±0.11 0.333±0.00 0.311±0.03 0.254±0.06 0.429±0.13 0.250±0.08 0.120±0.01 N/A 0.226±0.05 0.146±0.01 0.197±0.05 0.529±0.22 0.343±0.20 0.199±0.07
ENSMUSG00000050423 ENSMUST00000132661 0.035±0.02 0.072±0.04 0.030±0.01 0.424±0.40 0.035±0.02 N/A 0.064±0.02 0.036±0.00 0.438±0.79 0.051±0.01 0.065±0.00 0.084±0.04 3.727±1.48 0.018±0.01
ENSMUST00000172766 N/A N/A N/A N/A N/A N/A N/A N/A 0.216±0.00 N/A N/A N/A N/A N/A

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