C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008KR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1417 VISTA 9606 9:95212060-95813032
GeneTranscriptPositionBiotype
ENSG00000158169 (FANCC)
Fanconi anemia, complementation group C 		ENST00000289081 (FANCC-001) 95099054-95317702 protein_coding
ENST00000375305 (FANCC-002) 95099055-95317225 protein_coding
ENST00000433829 (FANCC-004) 95172043-95316894 protein_coding
ENST00000464627 (FANCC-006) 95107101-95126918 processed_transcript
ENST00000464653 (FANCC-003) 95114135-95127420 processed_transcript
ENST00000474949 (FANCC-005) 95171116-95317709 processed_transcript
ENST00000477942 (FANCC-008) 95109597-95135543 processed_transcript
ENST00000480712 (FANCC-009) 95107348-95135373 processed_transcript
ENST00000490972 (FANCC-201) 95110228-95317709 protein_coding
ENST00000493098 (FANCC-010) 95145270-95150033 processed_transcript
ENSG00000185920 (PTCH1)
patched 1 		ENST00000331920 (PTCH1-001) 95442980-95508661 protein_coding
ENST00000375271 (PTCH1-005) 95468938-95480485 protein_coding
ENST00000375274 (PTCH1-007) 95446159-95516965 protein_coding
ENST00000375290 (PTCH1-015) 95443412-95506599 nonsense_mediated_decay
ENST00000418258 (PTCH1-201) 95442984-95507199 protein_coding
ENST00000421141 (PTCH1-202) 95442984-95508040 protein_coding
ENST00000429896 (PTCH1-002) 95444162-95507417 protein_coding
ENST00000430669 (PTCH1-003) 95443412-95517057 protein_coding
ENST00000437951 (PTCH1-203) 95442984-95516965 protein_coding
ENST00000468211 (PTCH1-006) 95481829-95517057 protein_coding
ENST00000488809 (PTCH1-004) 95479856-95480455 retained_intron
ENST00000546744 (PTCH1-018) 95443412-95449936 retained_intron
ENST00000546820 (PTCH1-010) 95480061-95508040 protein_coding
ENST00000547615 (PTCH1-024) 95456407-95459955 processed_transcript
ENST00000547672 (PTCH1-009) 95480061-95508040 protein_coding
ENST00000548379 (PTCH1-022) 95480440-95503346 processed_transcript
ENST00000548420 (PTCH1-019) 95479996-95506665 protein_coding
ENST00000548945 (PTCH1-013) 95480539-95506599 processed_transcript
ENST00000549678 (PTCH1-023) 95467287-95469189 retained_intron
ENST00000550136 (PTCH1-017) 95481829-95484309 retained_intron
ENST00000550914 (PTCH1-014) 95480539-95506599 nonsense_mediated_decay
ENST00000551425 (PTCH1-008) 95485824-95516658 processed_transcript
ENST00000551623 (PTCH1-016) 95481971-95516658 nonsense_mediated_decay
ENST00000551630 (PTCH1-020) 95481966-95506610 protein_coding
ENST00000551845 (PTCH1-011) 95480061-95507266 protein_coding
ENST00000553011 (PTCH1-012) 95480061-95507199 protein_coding
ENST00000553256 (PTCH1-021) 95480544-95494401 processed_transcript
ENSG00000213761 (MT1P1)
metallothionein 1 pseudogene 1 		ENST00000396160 (MT1P1-001) 95413267-95413449 processed_pseudogene
ENSG00000228142 (RP11-180I4.2)
 ENST00000422343 (RP11-180I4.2-001) 95650154-95715718 lincRNA
ENST00000580326 (RP11-180I4.2-002) 95650162-95715697 lincRNA
ENSG00000229345 (RP11-332M4.1)
 ENST00000419620 (RP11-332M4.1-001) 95599545-95606286 lincRNA
ENSG00000230221 (RP11-173G21.1)
 ENST00000445995 (RP11-173G21.1-001) 95292338-95294810 processed_pseudogene
ENSG00000237857 (RP11-435O5.2)
 ENST00000433644 (RP11-435O5.2-001) 95414834-95426796 lincRNA
ENSG00000271155 (RP11-435O5.5)
 ENST00000604104 (RP11-435O5.5-001) 95506235-95507636 antisense
ENSG00000271314 (RP11-435O5.6)
 ENST00000605700 (RP11-435O5.6-001) 95494924-95495379 antisense
ENSG00000271384 (RP11-435O5.7)
 ENST00000603533 (RP11-435O5.7-001) 95406990-95407662 lincRNA
ENSG00000271659 (RP11-435O5.4)
 ENST00000604650 (RP11-435O5.4-001) 95514045-95514520 antisense
CIL_0008KR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1417 VISTA 10090 13:63268917-63869745
GeneTranscriptPositionBiotype
ENSMUSG00000021458 (2010111I01Rik)
RIKEN cDNA 2010111I01 gene 		ENSMUST00000021911 (2010111I01Rik-201) 63015167-63302284 protein_coding
ENSMUST00000091560 (2010111I01Rik-202) 63014934-63299656 protein_coding
ENSMUST00000159152 (2010111I01Rik-002) 63282142-63326096 protein_coding
ENSMUSG00000021466 (Ptch1)
patched homolog 1 		ENSMUST00000021921 (Ptch1-201) 63511533-63565520 protein_coding
ENSMUSG00000065475 (Mir27b)
microRNA 27b 		ENSMUST00000083541 (Mir27b-201) 63300700-63300796 miRNA
ENSMUSG00000065599 (Mir23b)
microRNA 23b 		ENSMUST00000083665 (Mir23b-201) 63300472-63300568 miRNA
ENSMUSG00000089854 (Gm16133)
predicted gene 16133 		ENSMUST00000160065 (Gm16133-002) 63333210-63339956 antisense
ENSMUST00000160278 (Gm16133-001) 63333137-63339959 antisense
ENSMUSG00000089868 (Gm16134)
predicted gene 16134 		ENSMUST00000161714 (Gm16134-001) 63446930-63447265 processed_pseudogene
ENSMUSG00000090232 (Gm16132)
predicted gene 16132 		ENSMUST00000159296 (Gm16132-001) 63376761-63381045 sense_intronic
ENSMUSG00000092741 (Mir3074-1)
microRNA 3074-1 		ENSMUST00000175000 (Mir3074-1-201) 63301180-63301296 miRNA
ENSMUSG00000097242 (Gm16907)
predicted gene, 16907 		ENSMUST00000180734 (Gm16907-201) 63289601-63297147 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008KR_0001ENSG00000158169ENST00000289081ENST00000464627ENST00000490972ENSG00000185920ENST00000331920ENST00000375271ENST00000375274ENST00000375290ENST00000421141ENST00000429896ENST00000430669ENST00000437951ENST00000546744ENST00000547615ENST00000549678ENSG00000213761ENST00000396160ENSG00000228142ENST00000422343ENSG00000229345ENST00000419620ENSG00000230221ENST00000445995ENSG00000237857ENST00000433644ENSG00000271155ENST00000604104ENSG00000271314ENST00000605700ENSG00000271384ENST00000603533ENSG00000271659ENST00000604650CIL_0008KR_0002ENSMUSG00000021458ENSMUST00000021911ENSMUST00000091560ENSMUSG00000021466ENSMUST00000021921ENSMUSG00000065475ENSMUST00000083541ENSMUSG00000065599ENSMUST00000083665ENSMUSG00000089854ENSMUST00000160065ENSMUST00000160278ENSMUSG00000089868ENSMUST00000161714ENSMUSG00000090232ENSMUST00000159296ENSMUSG00000092741ENSMUST00000175000ENSMUSG00000097242ENSMUST00000180734
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000158169 ENST00000289081 0.438±0.00 N/A N/A N/A 0.767±0.00 N/A 0.297±0.00 N/A N/A 1.099±0.00 N/A 0.925±0.05 0.747±0.02 3.164±0.28
ENST00000375305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.770±0.00
ENST00000464653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490972 N/A 0.297±0.00 N/A N/A 0.223±0.00 N/A 0.110±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000493098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185920 ENST00000331920 N/A 0.289±0.00 N/A N/A 1.005±0.00 N/A 0.138±0.00 0.505±0.45 0.085±0.00 0.308±0.00 N/A 0.572±0.07 0.338±0.00 3.642±0.00
ENST00000375271 N/A N/A N/A N/A 6.325±0.00 N/A 0.510±0.00 N/A N/A N/A N/A N/A N/A 8.478±0.00
ENST00000375274 N/A N/A N/A N/A N/A N/A 0.225±0.00 N/A N/A N/A N/A N/A 0.666±0.00 1.591±0.00
ENST00000375290 N/A 0.251±0.00 0.205±0.00 N/A 0.237±0.00 N/A 0.058±0.00 0.023±0.00 0.547±0.00 0.369±0.00 N/A 0.297±0.14 N/A 0.685±0.00
ENST00000418258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.469±0.14 N/A N/A
ENST00000429896 1.512±0.00 0.654±0.00 0.279±0.00 0.926±0.58 1.051±0.64 1.675±0.00 0.243±0.12 N/A 0.925±0.72 0.443±0.06 0.309±0.28 0.814±0.03 0.806±0.16 2.859±0.00
ENST00000430669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.619±0.00
ENST00000437951 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.459±0.00 N/A N/A N/A N/A
ENST00000468211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546744 0.905±0.00 1.575±0.00 N/A 0.655±0.30 1.237±0.00 1.181±0.00 0.436±0.00 1.933±0.00 0.305±0.00 0.398±0.00 0.347±0.18 1.227±0.60 0.323±0.00 5.088±2.87
ENST00000546820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547615 N/A N/A N/A N/A N/A N/A N/A 0.689±0.00 N/A N/A N/A N/A N/A N/A
ENST00000547672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549678 N/A N/A N/A N/A N/A N/A 0.864±0.00 N/A N/A N/A 0.497±0.00 N/A N/A N/A
ENST00000550136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213761 ENST00000396160 N/A N/A N/A N/A N/A N/A N/A N/A 0.698±0.00 N/A N/A N/A N/A 0.141±0.00
ENSG00000228142 ENST00000422343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.166±0.00 0.125±0.02
ENST00000580326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229345 ENST00000419620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.093±0.00
ENSG00000230221 ENST00000445995 0.021±0.00 0.022±0.00 0.038±0.00 0.028±0.00 0.080±0.00 0.149±0.00 N/A N/A N/A 0.284±0.00 0.005±0.00 0.031±0.02 0.013±0.00 0.064±0.05
ENSG00000237857 ENST00000433644 0.008±0.00 0.016±0.00 0.341±0.00 0.032±0.00 0.072±0.03 0.143±0.00 0.102±0.06 0.318±0.18 0.042±0.00 0.214±0.09 0.469±0.00 0.351±0.09 0.114±0.07 0.219±0.01
ENSG00000271155 ENST00000604104 N/A N/A 1.599±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271314 ENST00000605700 N/A 0.089±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.415±0.00 0.125±0.00
ENSG00000271384 ENST00000603533 0.293±0.00 0.157±0.00 N/A 0.041±0.00 0.475±0.04 0.140±0.02 0.072±0.00 0.928±0.28 0.153±0.00 N/A 0.171±0.00 0.133±0.09 N/A 0.631±0.47
ENSG00000271659 ENST00000604650 0.162±0.00 N/A N/A 0.326±0.00 0.882±0.00 1.656±0.00 0.073±0.00 N/A 0.131±0.06 N/A N/A 1.104±0.76 0.295±0.00 1.666±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021458 ENSMUST00000021911 N/A N/A N/A 4.230±0.00 N/A 11.040±0.00 5.218±1.72 7.347±2.39 1.927±0.47 12.905±0.00 3.034±0.36 4.010±0.00 2.641±0.50 3.203±0.97
ENSMUST00000091560 6.183±2.22 5.682±0.53 N/A 3.654±0.16 4.415±1.19 8.203±0.00 4.223±0.00 4.359±0.00 1.750±0.54 11.983±0.00 2.178±0.47 7.075±2.49 1.590±0.22 1.562±0.07
ENSMUST00000159152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000021466 ENSMUST00000021921 12.157±5.41 15.767±2.95 N/A 3.023±0.14 7.991±1.70 11.150±6.48 2.301±0.64 6.321±3.77 3.640±1.74 16.532±6.94 0.503±0.10 33.105±9.28 1.663±0.93 1.808±0.73
ENSMUSG00000065475 ENSMUST00000083541 N/A 5492.440±0.00 N/A N/A 8503.580±0.00 44261.801±0.00 N/A 4055.150±0.00 N/A N/A N/A 1803.745±1213.13 80.661±11.20 3120.990±0.00
ENSMUSG00000065599 ENSMUST00000083665 4180.540±0.00 N/A N/A N/A 4107.480±0.00 N/A N/A 3262.390±0.00 N/A N/A N/A N/A 92.228±0.00 N/A
ENSMUSG00000089854 ENSMUST00000160065 0.095±0.02 0.161±0.04 0.036±0.00 0.048±0.01 0.178±0.11 0.184±0.09 N/A 0.091±0.04 0.042±0.02 0.226±0.02 N/A 0.367±0.11 0.024±0.00 0.072±0.02
ENSMUST00000160278 0.053±0.02 N/A N/A 0.151±0.07 N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A
ENSMUSG00000089868 ENSMUST00000161714 N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090232 ENSMUST00000159296 N/A N/A 0.070±0.00 0.071±0.05 0.210±0.01 N/A N/A 0.100±0.00 0.041±0.00 N/A N/A 0.062±0.00 0.012±0.00 N/A
ENSMUSG00000092741 ENSMUST00000175000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.992±0.97 1193.220±0.00
ENSMUSG00000097242 ENSMUST00000180734 N/A N/A N/A N/A 3.467±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.394±0.35

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