C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: diphthamine biosynthesis 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021905 Dph3 10090 - 14:32080566-32085692 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022461 Dph3-002 32080566-32085609 protein_coding
  ENSMUST00000067955 Dph3-001 32080569-32085609 protein_coding
  ENSMUST00000112000 Dph3-004 32084696-32085609 protein_coding
  ENSMUST00000112001 Dph3-003 32080569-32085609 nonsense_mediated_decay
  ENSMUST00000124303 Dph3-005 32082758-32085609 protein_coding
  ENSMUST00000144149 Dph3-006 32082876-32085286 retained_intron
  ENSMUST00000167796 Dph3-007 32082872-32085692 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022461ENSMUST00000067955ENSMUST00000112001ENSMUST00000124303ENSMUST00000144149ENSMUST00000167796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.654±0.00 N/A N/A N/A
ENSMUST00000067955 4.680±0.78 3.617±0.68 5.967±0.21 7.233±1.05 3.325±0.50 4.022±0.90 4.489±0.66 4.132±0.75 3.527±1.20 3.961±1.26 3.906±0.51 5.385±0.87 3.048±0.47 2.783±0.12
ENSMUST00000112001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.217±0.49 N/A 1.232±0.00
ENSMUST00000124303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.784±4.66 N/A
ENSMUST00000144149 N/A N/A 10.785±0.00 N/A 6.705±0.00 10.561±3.15 N/A N/A 7.069±0.00 N/A N/A 13.024±1.35 19.558±3.63 9.046±0.00
ENSMUST00000167796 N/A N/A N/A N/A 11.217±2.69 N/A N/A 11.940±0.92 21.224±0.00 N/A 40.813±2.91 N/A 24.003±13.38 31.956±9.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HN CIL_0004HN_0002 CGP 14:32028989-32085692
CIL_0004HO CIL_0004HO_0002 CGP 14:32080566-32103202

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0017183 ISS peptidyl-diphthamide biosynthetic process from peptidyl-histidine
GO:0046872 IEA metal ion binding
GO:0050709 ISS negative regulation of protein secretion
GO:0051099 ISS positive regulation of binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043360 dph3 diphthamide biosynthesis 3 protein_coding Danio_rerio
ENSG00000154813 DPH3 diphthamide biosynthesis 3 protein_coding Homo_sapiens

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