C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) binding protein, nuclear 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022194 Pabpn1 10090 + 14:54892500-54898169 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022808 Pabpn1-001 54894148-54898169 protein_coding
  ENSMUST00000116476 Pabpn1-003 54894148-54898156 protein_coding
  ENSMUST00000139985 Pabpn1-006 54894602-54897399 protein_coding
  ENSMUST00000140691 Pabpn1-004 54892500-54897183 protein_coding
  ENSMUST00000141446 Pabpn1-005 54894573-54897557 protein_coding
  ENSMUST00000146271 Pabpn1-007 54894833-54895890 protein_coding
  ENSMUST00000150975 Pabpn1-002 54894155-54898096 protein_coding
  ENSMUST00000172557 Pabpn1-009 54894618-54898134 protein_coding
  ENSMUST00000172695 Pabpn1-008 54894156-54898056 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000022808ENSMUST00000116476ENSMUST00000150975ENSMUST00000172557ENSMUST00000172695
Transcript ID Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022808 N/A N/A 78.000±0.00 N/A N/A 29.548±1.94 N/A 18.199±1.27 91.834±0.00 70.826±35.20 192.362±145.74
ENSMUST00000116476 55.542±0.00 87.194±0.00 88.261±8.52 N/A 11.899±0.00 23.912±4.42 28.833±0.00 13.319±1.53 N/A 28.197±6.32 65.053±0.00
ENSMUST00000150975 N/A 37.811±0.00 58.840±0.00 35.389±0.00 17.332±4.19 18.844±3.27 24.381±0.86 N/A 46.752±0.00 14.196±0.22 25.296±2.88
ENSMUST00000172557 N/A N/A N/A N/A N/A 42.803±0.00 N/A N/A 131.923±8.27 N/A N/A
ENSMUST00000172695 N/A 85.807±12.20 N/A N/A N/A 48.246±13.38 N/A N/A N/A 48.374±17.72 116.119±30.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_00051H CIL_00051H_0002 CGP 14:54883377-54898137
CIL_00051J CIL_00051J_0002 CGP 14:54883441-54898169
CIL_00051C CIL_00051C_0002 CGP 14:54892500-54913132

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006378 TAS mRNA polyadenylation
GO:0008143 TAS poly(A) binding
GO:0016973 IEA poly(A)+ mRNA export from nucleus
GO:0030529 ISS ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045373 pabpn1 poly(A) binding protein, nuclear 1 protein_coding Danio_rerio
ENSG00000100836 PABPN1 poly(A) binding protein, nuclear 1 protein_coding Homo_sapiens

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