C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, nuclear 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116476 Pabpn1-003 ENSMUSG00000022194 10090 + 14:54894148-54898156 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonLiverLungMusclePlacentaTestisENSMUST00000116476
Transcript ID Adrenal Bladder Brain Colon Liver Lung Muscle Placenta Testis
ENSMUST00000116476 55.542±0.00 87.194±0.00 88.261±8.52 11.899±0.00 23.912±4.42 28.833±0.00 13.319±1.53 28.197±6.32 65.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_00051H CIL_00051H_0002 CGP 14:54883377-54898137
CIL_00051J CIL_00051J_0002 CGP 14:54883441-54898169
CIL_00051C CIL_00051C_0002 CGP 14:54892500-54913132

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006378 TAS mRNA polyadenylation
GO:0008143 TAS poly(A) binding
GO:0030529 ISS ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216727 PABPN1-001 protein_coding Homo_sapiens 0 1295
ENST00000339844 ZNF28-006 protein_coding Homo_sapiens 0 287
ENST00000391782 AL590762.11-001 processed_pseudogene Homo_sapiens 0 529
ENST00000397276 PABPN1-003 protein_coding Homo_sapiens 0 1382
ENST00000536597 CTD-2102P23.1-001 processed_pseudogene Homo_sapiens 0 915
ENST00000553781 BCL2L2-PABPN1-001 protein_coding Homo_sapiens 0 795
ENST00000553960 PABPN1-008 retained_intron Homo_sapiens 0 603
ENST00000554062 PABPN1-007 retained_intron Homo_sapiens 0 496
ENST00000555295 PABPN1-009 protein_coding Homo_sapiens 0 459
ENST00000556809 PABPN1-005 retained_intron Homo_sapiens 0 283
ENST00000556821 PABPN1-004 protein_coding Homo_sapiens 0 795
ENST00000557008 BCL2L2-PABPN1-002 protein_coding Homo_sapiens 0 795
ENST00000557702 PABPN1-006 protein_coding Homo_sapiens 0 869

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