C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, nuclear 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150975 Pabpn1-002 ENSMUSG00000022194 10090 + 14:54894155-54898096 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000150975
Transcript ID Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000150975 37.811±0.00 58.840±0.00 35.389±0.00 17.332±4.19 18.844±3.27 24.381±0.86 46.752±0.00 14.196±0.22 25.296±2.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_00051H CIL_00051H_0002 CGP 14:54883377-54898137
CIL_00051J CIL_00051J_0002 CGP 14:54883441-54898169
CIL_00051C CIL_00051C_0002 CGP 14:54892500-54913132

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0006378 TAS mRNA polyadenylation
GO:0008143 TAS poly(A) binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216727 PABPN1-001 protein_coding Homo_sapiens 0 1070
ENST00000339844 ZNF28-006 protein_coding Homo_sapiens 0 287
ENST00000391782 AL590762.11-001 processed_pseudogene Homo_sapiens 0 368
ENST00000397276 PABPN1-003 protein_coding Homo_sapiens 0 1070
ENST00000536597 CTD-2102P23.1-001 processed_pseudogene Homo_sapiens 0 743
ENST00000553781 BCL2L2-PABPN1-001 protein_coding Homo_sapiens 0 582
ENST00000553960 PABPN1-008 retained_intron Homo_sapiens 0 307
ENST00000554062 PABPN1-007 retained_intron Homo_sapiens 0 396
ENST00000555295 PABPN1-009 protein_coding Homo_sapiens 0 278
ENST00000556809 PABPN1-005 retained_intron Homo_sapiens 0 283
ENST00000556821 PABPN1-004 protein_coding Homo_sapiens 0 582
ENST00000557008 BCL2L2-PABPN1-002 protein_coding Homo_sapiens 0 582
ENST00000557702 PABPN1-006 protein_coding Homo_sapiens 0 582

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