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C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | poly(A) binding protein, nuclear 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000139985  |
Pabpn1-006 |
ENSMUSG00000022194 |
10090 | + |
14:54894602-54897399  |
protein_coding |
|
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Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00090C | CIL_00090C_0002 | VISTA | 14:54638004-55241428 |
| CIL_0009BW | CIL_0009BW_0002 | VISTA | 14:54696106-55297707 |
| CIL_0008Q4 | CIL_0008Q4_0002 | VISTA | 14:54696894-55297224 |
| CIL_0008QH | CIL_0008QH_0002 | VISTA | 14:54703667-55304830 |
| CIL_00051H | CIL_00051H_0002 | CGP | 14:54883377-54898137 |
| CIL_00051J | CIL_00051J_0002 | CGP | 14:54883441-54898169 |
| CIL_00051C | CIL_00051C_0002 | CGP | 14:54892500-54913132 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0006378 | TAS | mRNA polyadenylation |
| GO:0008143 | TAS | poly(A) binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000216727
|
PABPN1-001 | protein_coding | Homo_sapiens | 0 | 795 |
|
ENST00000339844
|
ZNF28-006 | protein_coding | Homo_sapiens | 0 | 287 |
|
ENST00000391782
|
AL590762.11-001 | processed_pseudogene | Homo_sapiens | 0 | 529 |
|
ENST00000397276
|
PABPN1-003 | protein_coding | Homo_sapiens | 0 | 869 |
|
ENST00000536597
|
CTD-2102P23.1-001 | processed_pseudogene | Homo_sapiens | 0 | 662 |
|
ENST00000553781
|
BCL2L2-PABPN1-001 | protein_coding | Homo_sapiens | 0 | 795 |
|
ENST00000553960
|
PABPN1-008 | retained_intron | Homo_sapiens | 0 | 590 |
|
ENST00000554062
|
PABPN1-007 | retained_intron | Homo_sapiens | 0 | 496 |
|
ENST00000555295
|
PABPN1-009 | protein_coding | Homo_sapiens | 0 | 459 |
|
ENST00000556809
|
PABPN1-005 | retained_intron | Homo_sapiens | 0 | 324 |
|
ENST00000556821
|
PABPN1-004 | protein_coding | Homo_sapiens | 0 | 835 |
|
ENST00000557008
|
BCL2L2-PABPN1-002 | protein_coding | Homo_sapiens | 0 | 795 |
|
ENST00000557702
|
PABPN1-006 | protein_coding | Homo_sapiens | 0 | 909 |
