C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox C5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022485 Hoxc5 10090 + 15:102967443-103017429 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001709 Hoxc5-001 103013815-103017429 protein_coding
  ENSMUST00000174869 Hoxc5-002 102967443-103015676 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000001709ENSMUST00000174869
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000001709 3.474±2.36 4.226±0.93 0.413±0.00 1.292±0.97 3.024±0.49 0.044±0.01 0.071±0.04 1.042±0.10 0.046±0.04 0.579±0.32 3.938±1.66 0.144±0.12 0.094±0.06
ENSMUST00000174869 N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A 0.036±0.00 N/A N/A 0.225±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_00003G CIL_00003G_0002 CGP 15:102954427-102971893

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0030054 IEA cell junction
GO:0043565 IEA sequence-specific DNA binding
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070340 hoxc5a homeo box C5a protein_coding Danio_rerio
ENSG00000172789 HOXC5 homeobox C5 protein_coding Homo_sapiens

Loading