C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001709 Hoxc5-001 ENSMUSG00000022485 10090 + 15:103013815-103017429 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000001709
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000001709 3.474±2.36 4.226±0.93 0.413±0.00 1.292±0.97 3.024±0.49 0.044±0.01 0.071±0.04 1.042±0.10 0.046±0.04 0.579±0.32 3.938±1.66 0.144±0.12 0.094±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_00003G CIL_00003G_0002 CGP 15:102954427-102971893

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0030054 IEA cell junction
GO:0043565 IEA sequence-specific DNA binding
GO:0048706 IGI embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000057730 dbx2-201 protein_coding Danio_rerio 0.00000000004 75
ENST00000312492 HOXC5-001 protein_coding Homo_sapiens 0 1748
ENST00000343483 HOXA9-001 protein_coding Homo_sapiens 0.0000000001 73
ENST00000396345 HOXA9-003 protein_coding Homo_sapiens 0.00000000004 73
ENST00000470747 HOXA10-HOXA9-001 protein_coding Homo_sapiens 0.00000000004 73
ENST00000487384 HOXA9-004 processed_transcript Homo_sapiens 0.00000000003 73
ENST00000497089 HOXA9-002 processed_transcript Homo_sapiens 0.00000000007 73
ENST00000513209 RP11-834C11.12-001 protein_coding Homo_sapiens 0 468

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