C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chloride channel 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022843 Clcn2 10090 - 16:20702964-20717746 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007207 Clcn2-001 20702964-20716117 protein_coding
  ENSMUST00000120099 Clcn2-005 20703223-20716111 protein_coding
  ENSMUST00000123417 Clcn2-009 20707706-20708734 retained_intron
  ENSMUST00000131522 Clcn2-002 20705538-20717746 nonsense_mediated_decay
  ENSMUST00000131833 Clcn2-007 20710091-20711965 retained_intron
  ENSMUST00000132512 Clcn2-006 20712311-20713668 retained_intron
  ENSMUST00000144400 Clcn2-008 20707174-20709126 retained_intron
  ENSMUST00000148131 Clcn2-003 20702988-20716114 retained_intron
  ENSMUST00000153075 Clcn2-004 20702998-20716164 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000007207ENSMUST00000144400ENSMUST00000148131ENSMUST00000153075
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000007207 2.335±1.44 56.273±4.66 N/A 11.321±0.91 2.093±0.15 72.776±7.27 2.077±0.00 6.489±1.16 12.504±7.74 1.635±0.19 8.967±3.45 2.902±0.88 8.741±0.70
ENSMUST00000144400 N/A N/A N/A N/A 7.755±0.00 N/A N/A N/A N/A N/A 19.582±2.89 N/A N/A
ENSMUST00000148131 2.678±0.00 N/A N/A 4.210±0.00 N/A N/A N/A N/A N/A N/A 5.933±1.50 N/A N/A
ENSMUST00000153075 5.017±3.07 32.112±6.39 3.372±0.16 9.027±0.28 2.978±0.94 36.666±8.32 N/A 3.193±1.42 5.291±1.44 1.529±0.24 12.612±4.62 2.533±0.92 15.521±1.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056Z CIL_00056Z_0002 CGP 16:20668313-20703048
CIL_000570 CIL_000570_0002 CGP 16:20693282-20717746
CIL_00056X CIL_00056X_0002 CGP 16:20702964-20722267

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005247 IMP voltage-gated chloride channel activity
GO:0006821 IEA chloride transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0060041 IMP retina development in camera-type eye
GO:0060689 IMP cell differentiation involved in salivary gland development
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060439 CLCN2 (1 of 3) chloride channel, voltage-sensitive 2 protein_coding Danio_rerio
ENSDARG00000062427 clcn2 chloride channel 2 protein_coding Danio_rerio
ENSDARG00000074681 CLCN2 (3 of 3) chloride channel, voltage-sensitive 2 protein_coding Danio_rerio
ENSG00000114859 CLCN2 chloride channel, voltage-sensitive 2 protein_coding Homo_sapiens

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