C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | chloride channel 2 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000131522  |
Clcn2-002 |
ENSMUSG00000022843 |
10090 | - |
16:20705538-20717746  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00056Z | CIL_00056Z_0002 | CGP | 16:20668313-20703048 |
| CIL_000570 | CIL_000570_0002 | CGP | 16:20693282-20717746 |
| CIL_00056X | CIL_00056X_0002 | CGP | 16:20702964-20722267 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005247 | IMP | voltage-gated chloride channel activity |
| GO:0006821 | IEA | chloride transport |
| GO:0016020 | IEA | membrane |
| GO:0034220 | IEA | ion transmembrane transport |
| GO:0044070 | IEA | regulation of anion transport |
| GO:0060041 | IMP | retina development in camera-type eye |
| GO:0060689 | IMP | cell differentiation involved in salivary gland development |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSDART00000145720
|
clcn2-001 | protein_coding | Danio_rerio | 0 | 586 |
|
ENSDART00000090260
|
clcn2-201 | protein_coding | Danio_rerio | 0 | 520 |
|
ENSDART00000135579
|
clcn2-002 | retained_intron | Danio_rerio | 0 | 287 |
|
ENST00000265593
|
CLCN2-001 | protein_coding | Homo_sapiens | 0 | 1899 |
|
ENST00000344937
|
CLCN2-004 | protein_coding | Homo_sapiens | 0 | 1845 |
|
ENST00000430397
|
CLCN2-006 | nonsense_mediated_decay | Homo_sapiens | 0 | 889 |
|
ENST00000434054
|
CLCN2-003 | protein_coding | Homo_sapiens | 0 | 1404 |
|
ENST00000457512
|
CLCN2-002 | protein_coding | Homo_sapiens | 0 | 1847 |
|
ENST00000465231
|
CLCN2-009 | retained_intron | Homo_sapiens | 0 | 326 |
|
ENST00000475279
|
CLCN2-007 | processed_transcript | Homo_sapiens | 0 | 298 |
|
ENST00000485667
|
CLCN2-005 | retained_intron | Homo_sapiens | 0 | 1718 |
