C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148131 Clcn2-003 ENSMUSG00000022843 10090 - 16:20702988-20716114 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainOvaryENSMUST00000148131
Transcript ID Adipose Brain Ovary
ENSMUST00000148131 2.678±0.00 4.210±0.00 5.933±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056Z CIL_00056Z_0002 CGP 16:20668313-20703048
CIL_000570 CIL_000570_0002 CGP 16:20693282-20717746
CIL_00056X CIL_00056X_0002 CGP 16:20702964-20722267

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090260 clcn2-201 protein_coding Danio_rerio 1e-21 110
ENSDART00000145720 clcn2-001 protein_coding Danio_rerio 1e-21 110
ENSDART00000135579 clcn2-002 retained_intron Danio_rerio 2e-20 106
ENST00000265593 CLCN2-001 protein_coding Homo_sapiens 0 1567
ENST00000310585 FAM131A-002 protein_coding Homo_sapiens 0.0000000007 71
ENST00000340957 FAM131A-001 protein_coding Homo_sapiens 0.000000006 68
ENST00000344937 CLCN2-004 protein_coding Homo_sapiens 0 1175
ENST00000430397 CLCN2-006 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000434054 CLCN2-003 protein_coding Homo_sapiens 0 1567
ENST00000457512 CLCN2-002 protein_coding Homo_sapiens 0 1218
ENST00000465231 CLCN2-009 retained_intron Homo_sapiens 0 359
ENST00000475279 CLCN2-007 processed_transcript Homo_sapiens 9e-29 130
ENST00000485667 CLCN2-005 retained_intron Homo_sapiens 0 636

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