C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153075 Clcn2-004 ENSMUSG00000022843 10090 - 16:20702998-20716164 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000153075
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000153075 5.017±3.07 32.112±6.39 3.372±0.16 9.027±0.28 2.978±0.94 36.666±8.32 3.193±1.42 5.291±1.44 1.529±0.24 12.612±4.62 2.533±0.92 15.521±1.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056Z CIL_00056Z_0002 CGP 16:20668313-20703048
CIL_000570 CIL_000570_0002 CGP 16:20693282-20717746
CIL_00056X CIL_00056X_0002 CGP 16:20702964-20722267

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000145720 clcn2-001 protein_coding Danio_rerio 0 749
ENSDART00000090260 clcn2-201 protein_coding Danio_rerio 0 682
ENSDART00000135579 clcn2-002 retained_intron Danio_rerio 0 287
ENST00000265593 CLCN2-001 protein_coding Homo_sapiens 0 2671
ENST00000310585 FAM131A-002 protein_coding Homo_sapiens 0.0000000007 71
ENST00000340957 FAM131A-001 protein_coding Homo_sapiens 0.000000006 68
ENST00000344937 CLCN2-004 protein_coding Homo_sapiens 0 1845
ENST00000430397 CLCN2-006 nonsense_mediated_decay Homo_sapiens 0 769
ENST00000434054 CLCN2-003 protein_coding Homo_sapiens 0 2176
ENST00000457512 CLCN2-002 protein_coding Homo_sapiens 0 2619
ENST00000465231 CLCN2-009 retained_intron Homo_sapiens 0 326
ENST00000475279 CLCN2-007 processed_transcript Homo_sapiens 0 298
ENST00000485667 CLCN2-005 retained_intron Homo_sapiens 0 1718
ENST00000491162 CLCN2-008 retained_intron Homo_sapiens 9e-36 154

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