C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007207 Clcn2-001 ENSMUSG00000022843 10090 - 16:20702964-20716117 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000007207
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000007207 2.335±1.44 56.273±4.66 11.321±0.91 2.093±0.15 72.776±7.27 2.077±0.00 6.489±1.16 12.504±7.74 1.635±0.19 8.967±3.45 2.902±0.88 8.741±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056Z CIL_00056Z_0002 CGP 16:20668313-20703048
CIL_000570 CIL_000570_0002 CGP 16:20693282-20717746
CIL_00056X CIL_00056X_0002 CGP 16:20702964-20722267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 IMP voltage-gated chloride channel activity
GO:0030554 IEA adenyl nucleotide binding
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0060041 IMP retina development in camera-type eye
GO:0060689 IMP cell differentiation involved in salivary gland development
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000145720 clcn2-001 protein_coding Danio_rerio 0 749
ENSDART00000090260 clcn2-201 protein_coding Danio_rerio 0 682
ENSDART00000135579 clcn2-002 retained_intron Danio_rerio 0 287
ENST00000265593 CLCN2-001 protein_coding Homo_sapiens 0 3219
ENST00000310585 FAM131A-002 protein_coding Homo_sapiens 0.0000000000003 82
ENST00000340957 FAM131A-001 protein_coding Homo_sapiens 0.000000000003 79
ENST00000344937 CLCN2-004 protein_coding Homo_sapiens 0 1845
ENST00000430397 CLCN2-006 nonsense_mediated_decay Homo_sapiens 0 889
ENST00000434054 CLCN2-003 protein_coding Homo_sapiens 0 2771
ENST00000457512 CLCN2-002 protein_coding Homo_sapiens 0 2865
ENST00000465231 CLCN2-009 retained_intron Homo_sapiens 0 326
ENST00000475279 CLCN2-007 processed_transcript Homo_sapiens 0 298
ENST00000485667 CLCN2-005 retained_intron Homo_sapiens 0 1718

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