C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain and WD repeat domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022914 Brwd1 10090 - 16:95992092-96082526 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023631 Brwd1-002 95992449-96082447 protein_coding
  ENSMUST00000099502 Brwd1-201 95992092-96082428 protein_coding
  ENSMUST00000113827 Brwd1-003 96066668-96082526 protein_coding
  ENSMUST00000113829 Brwd1-001 95999271-96082447 protein_coding
  ENSMUST00000124370 Brwd1-014 96035862-96061099 protein_coding
  ENSMUST00000126629 Brwd1-011 96046222-96047443 retained_intron
  ENSMUST00000127777 Brwd1-012 96009524-96011877 retained_intron
  ENSMUST00000130823 Brwd1-010 96019419-96019871 retained_intron
  ENSMUST00000131322 Brwd1-016 96003860-96047160 nonsense_mediated_decay
  ENSMUST00000139566 Brwd1-013 96035986-96061064 nonsense_mediated_decay
  ENSMUST00000147655 Brwd1-005 96016108-96017805 retained_intron
  ENSMUST00000148432 Brwd1-004 96033045-96035630 retained_intron
  ENSMUST00000152197 Brwd1-015 96011710-96027406 protein_coding
  ENSMUST00000153398 Brwd1-009 96002435-96082447 protein_coding
  ENSMUST00000156622 Brwd1-008 96005025-96009252 processed_transcript
  ENSMUST00000157037 Brwd1-006 96005418-96009159 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023631ENSMUST00000099502ENSMUST00000113827ENSMUST00000113829
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023631 N/A N/A N/A 3.115±0.00 N/A 1.275±0.00 N/A 0.865±0.00 0.539±0.10 N/A N/A 5.581±0.00 3.764±0.01 3.675±0.00
ENSMUST00000099502 N/A N/A N/A 3.745±0.39 N/A N/A N/A N/A 0.658±0.09 N/A N/A N/A 1.739±0.14 0.841±0.00
ENSMUST00000113827 7.578±3.54 18.840±14.32 N/A 58.733±1.28 11.752±6.02 8.448±3.66 8.569±0.45 4.914±0.62 4.348±0.62 7.774±0.57 N/A 19.668±9.07 9.533±2.65 5.369±1.20
ENSMUST00000113829 1.129±0.27 2.067±0.12 2.941±0.01 3.423±0.52 2.972±0.50 1.840±0.28 1.512±0.56 0.830±0.42 0.817±0.31 2.882±0.87 1.263±0.29 4.463±1.19 2.894±0.99 3.522±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UB CIL_0007UB_0002 VISTA 16:95547910-96149564
CIL_0003GK CIL_0003GK_0002 CGP 16:95979933-96082526
CIL_0004KG CIL_0004KG_0002 CGP 16:95992092-96127729

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007010 ISS cytoskeleton organization
GO:0008360 ISS regulation of cell shape

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074747 brwd1 bromodomain and WD repeat domain containing 1 protein_coding Danio_rerio
ENSG00000185658 BRWD1 bromodomain and WD repeat domain containing 1 protein_coding Homo_sapiens

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