C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004KG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185658-ENSG00000205581 CGP 9606 21:39184176-39349647
GeneTranscriptPositionBiotype
ENSG00000185658 (BRWD1)
bromodomain and WD repeat domain containing 1 		ENST00000333229 (BRWD1-001) 39184176-39313819 protein_coding
ENST00000341322 (BRWD1-004) 39296437-39313642 protein_coding
ENST00000342449 (BRWD1-002) 39190219-39313570 protein_coding
ENST00000380800 (BRWD1-016) 39193817-39313590 protein_coding
ENST00000412604 (BRWD1-015) 39236719-39280213 nonsense_mediated_decay
ENST00000424441 (BRWD1-010) 39202366-39229392 protein_coding
ENST00000430093 (BRWD1-012) 39236718-39280213 nonsense_mediated_decay
ENST00000445245 (BRWD1-013) 39236718-39280213 nonsense_mediated_decay
ENST00000445668 (BRWD1-011) 39236718-39280213 nonsense_mediated_decay
ENST00000446924 (BRWD1-009) 39187246-39264941 nonsense_mediated_decay
ENST00000455867 (BRWD1-014) 39236719-39280213 protein_coding
ENST00000470108 (BRWD1-008) 39298090-39321559 processed_transcript
ENST00000473813 (BRWD1-006) 39209786-39218660 retained_intron
ENST00000484090 (BRWD1-005) 39312563-39313301 retained_intron
ENST00000491564 (BRWD1-007) 39199419-39200496 retained_intron
ENST00000496759 (BRWD1-003) 39278497-39280207 retained_intron
ENSG00000205581 (HMGN1)
high mobility group nucleosome binding domain 1 		ENST00000288344 (HMGN1-004) 39342315-39348991 nonsense_mediated_decay
ENST00000380747 (HMGN1-013) 39342879-39349647 protein_coding
ENST00000380748 (HMGN1-018) 39342692-39349053 protein_coding
ENST00000380749 (HMGN1-001) 39342315-39349200 protein_coding
ENST00000419378 (HMGN1-015) 39342788-39349040 nonsense_mediated_decay
ENST00000431390 (HMGN1-002) 39342315-39349140 nonsense_mediated_decay
ENST00000436324 (HMGN1-009) 39342646-39349088 nonsense_mediated_decay
ENST00000443046 (HMGN1-017) 39343009-39349054 nonsense_mediated_decay
ENST00000463631 (HMGN1-005) 39348065-39349054 retained_intron
ENST00000464078 (HMGN1-007) 39343137-39349054 retained_intron
ENST00000471260 (HMGN1-020) 39347492-39348620 processed_transcript
ENST00000479586 (HMGN1-019) 39347336-39349015 processed_transcript
ENST00000482192 (HMGN1-008) 39342804-39348623 processed_transcript
ENST00000482733 (HMGN1-014) 39347995-39349020 retained_intron
ENST00000485550 (HMGN1-021) 39342909-39348597 processed_transcript
ENST00000486741 (HMGN1-006) 39342315-39349099 retained_intron
ENST00000489072 (HMGN1-012) 39342800-39348862 processed_transcript
ENST00000490032 (HMGN1-010) 39342978-39348339 processed_transcript
ENST00000491183 (HMGN1-016) 39347147-39349067 processed_transcript
ENST00000492280 (HMGN1-003) 39342315-39349344 retained_intron
ENSG00000229623 (METTL21AP1)
methyltransferase like 21A pseudogene 1 		ENST00000438852 (METTL21AP1-001) 39235386-39236020 processed_pseudogene
ENSG00000232608 (TIMM9P2)
translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 2 		ENST00000419324 (TIMM9P2-001) 39216624-39217506 processed_pseudogene
ENSG00000237373 (BRWD1-IT1)
BRWD1 intronic transcript 1 (non-protein coding) 		ENST00000435608 (BRWD1-IT1-001) 39217093-39219805 sense_overlapping
ENSG00000238141 (BRWD1-AS1)
BRWD1 antisense RNA 1 		ENST00000423274 (BRWD1-AS1-001) 39315707-39323218 antisense
ENSG00000255568 (BRWD1-AS2)
BRWD1 antisense RNA 2 		ENST00000603064 (BRWD1-AS2-001) 39313935-39314962 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0004KG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022914-ENSMUSG00000040681 CGP 10090 16:95992092-96127729
GeneTranscriptPositionBiotype
ENSMUSG00000022914 (Brwd1)
bromodomain and WD repeat domain containing 1 		ENSMUST00000023631 (Brwd1-002) 95992449-96082447 protein_coding
ENSMUST00000099502 (Brwd1-201) 95992092-96082428 protein_coding
ENSMUST00000113827 (Brwd1-003) 96066668-96082526 protein_coding
ENSMUST00000113829 (Brwd1-001) 95999271-96082447 protein_coding
ENSMUST00000124370 (Brwd1-014) 96035862-96061099 protein_coding
ENSMUST00000126629 (Brwd1-011) 96046222-96047443 retained_intron
ENSMUST00000127777 (Brwd1-012) 96009524-96011877 retained_intron
ENSMUST00000130823 (Brwd1-010) 96019419-96019871 retained_intron
ENSMUST00000131322 (Brwd1-016) 96003860-96047160 nonsense_mediated_decay
ENSMUST00000139566 (Brwd1-013) 96035986-96061064 nonsense_mediated_decay
ENSMUST00000147655 (Brwd1-005) 96016108-96017805 retained_intron
ENSMUST00000148432 (Brwd1-004) 96033045-96035630 retained_intron
ENSMUST00000152197 (Brwd1-015) 96011710-96027406 protein_coding
ENSMUST00000153398 (Brwd1-009) 96002435-96082447 protein_coding
ENSMUST00000156622 (Brwd1-008) 96005025-96009252 processed_transcript
ENSMUST00000157037 (Brwd1-006) 96005418-96009159 retained_intron
ENSMUSG00000022915 (1700093J21Rik)
RIKEN cDNA 1700093J21 gene 		ENSMUST00000143671 (1700093J21Rik-001) 96082676-96089070 antisense
ENSMUSG00000040681 (Hmgn1)
high mobility group nucleosomal binding domain 1 		ENSMUST00000050884 (Hmgn1-001) 96120618-96127729 protein_coding
ENSMUST00000133885 (Hmgn1-004) 96122376-96127604 protein_coding
ENSMUST00000142179 (Hmgn1-002) 96126605-96127466 retained_intron
ENSMUST00000145713 (Hmgn1-003) 96122234-96125339 retained_intron
ENSMUSG00000086093 (Gm15341)
predicted gene 15341 		ENSMUST00000137315 (Gm15341-001) 96098499-96113821 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KG_0001ENSG00000185658ENST00000333229ENST00000341322ENST00000342449ENST00000380800ENST00000412604ENST00000424441ENST00000430093ENST00000445245ENST00000445668ENST00000446924ENST00000455867ENST00000470108ENST00000473813ENST00000484090ENST00000491564ENST00000496759ENSG00000205581ENST00000288344ENST00000380747ENST00000380748ENST00000380749ENST00000419378ENST00000431390ENST00000436324ENST00000443046ENST00000463631ENST00000464078ENST00000471260ENST00000479586ENST00000482192ENST00000482733ENST00000485550ENST00000486741ENST00000489072ENST00000490032ENST00000491183ENST00000492280ENSG00000229623ENST00000438852ENSG00000232608ENST00000419324ENSG00000237373ENST00000435608ENSG00000238141ENST00000423274ENSG00000255568ENST00000603064CIL_0004KG_0002ENSMUSG00000022914ENSMUST00000023631ENSMUST00000099502ENSMUST00000113827ENSMUST00000113829ENSMUST00000124370ENSMUST00000126629ENSMUST00000127777ENSMUST00000130823ENSMUST00000131322ENSMUST00000139566ENSMUST00000147655ENSMUST00000148432ENSMUST00000152197ENSMUST00000153398ENSMUST00000156622ENSMUST00000157037ENSMUSG00000022915ENSMUST00000143671ENSMUSG00000040681ENSMUST00000050884ENSMUST00000133885ENSMUST00000142179ENSMUST00000145713ENSMUSG00000086093ENSMUST00000137315
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KG_0001ENSG00000185658ENST00000333229ENST00000341322ENST00000342449ENST00000380800ENST00000445245ENST00000446924ENSG00000205581ENST00000288344ENST00000380749ENST00000431390ENST00000464078ENST00000479586ENST00000486741ENST00000489072ENST00000492280ENSG00000229623ENST00000438852ENSG00000232608ENST00000419324ENSG00000237373ENST00000435608ENSG00000238141ENST00000423274ENSG00000255568ENST00000603064CIL_0004KG_0002ENSMUSG00000022914ENSMUST00000023631ENSMUST00000099502ENSMUST00000113827ENSMUST00000113829ENSMUSG00000022915ENSMUST00000143671ENSMUSG00000040681ENSMUST00000050884ENSMUST00000133885ENSMUSG00000086093ENSMUST00000137315
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000185658 ENST00000333229 N/A N/A 2.225±0.00 3.127±0.00 2.513±0.00 4.221±0.00 1.054±0.00 1.874±0.00 3.684±0.00 3.631±0.00 0.889±0.58 2.135±0.60 0.317±0.00 3.218±0.00
ENST00000341322 3.485±0.00 2.299±0.00 N/A 21.142±2.92 3.539±0.00 2.449±0.00 3.162±0.00 5.648±0.00 1.698±0.00 4.969±0.00 2.228±0.00 5.318±1.25 3.713±0.14 4.752±0.00
ENST00000342449 1.418±0.00 0.520±0.00 1.730±0.00 1.687±0.13 3.311±1.91 1.827±1.36 1.158±0.28 1.643±0.22 3.153±2.91 4.069±2.69 N/A 1.827±1.16 0.945±0.00 2.679±0.96
ENST00000380800 N/A N/A N/A N/A N/A 0.630±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.373±0.00 N/A N/A N/A
ENST00000445668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.483±0.00 N/A
ENST00000455867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000205581 ENST00000288344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.186±0.00 8.600±0.00 11.619±0.00
ENST00000380747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380749 38.088±0.00 12.319±0.00 6.537±0.00 6.400±3.38 21.325±8.28 17.905±4.82 4.615±2.21 21.847±10.50 13.447±5.08 31.387±21.87 2.102±0.82 54.972±34.69 32.054±6.32 31.469±15.03
ENST00000419378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.174±0.00
ENST00000436324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.894±0.00 N/A N/A N/A
ENST00000471260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479586 N/A N/A N/A N/A N/A N/A 1.772±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000482192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486741 N/A 2.482±0.00 1.448±0.00 0.947±0.10 1.930±0.00 3.195±0.00 0.701±0.10 1.857±0.00 N/A 2.575±0.00 N/A 5.175±1.45 N/A 4.795±0.00
ENST00000489072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.895±0.00
ENST00000490032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492280 N/A 3.323±0.00 N/A 1.367±0.00 2.495±0.00 N/A N/A N/A N/A N/A 0.771±0.00 4.164±0.00 N/A N/A
ENSG00000229623 ENST00000438852 0.176±0.00 0.044±0.00 1.814±0.00 0.161±0.11 0.425±0.25 1.146±1.13 0.705±0.64 0.494±0.00 1.171±0.00 2.368±0.00 0.286±0.00 0.258±0.00 0.057±0.00 0.123±0.00
ENSG00000232608 ENST00000419324 0.040±0.00 N/A N/A 0.435±0.00 0.329±0.00 0.106±0.00 0.185±0.00 N/A 1.383±0.00 0.400±0.23 N/A 0.176±0.00 N/A 0.094±0.00
ENSG00000237373 ENST00000435608 N/A 0.192±0.00 1.362±0.00 N/A 0.180±0.00 1.921±0.00 0.257±0.00 1.447±0.00 0.972±0.00 1.391±0.00 1.238±0.00 N/A N/A 0.117±0.00
ENSG00000238141 ENST00000423274 N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A 0.056±0.00 0.141±0.00 N/A 0.361±0.00 N/A 0.949±0.27
ENSG00000255568 ENST00000603064 0.387±0.00 0.586±0.00 N/A 0.462±0.00 0.799±0.00 N/A 0.277±0.00 0.750±0.00 0.229±0.01 0.045±0.00 0.127±0.00 0.398±0.28 0.130±0.04 15.310±7.86
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022914 ENSMUST00000023631 N/A N/A N/A 3.115±0.00 N/A 1.275±0.00 N/A 0.865±0.00 0.539±0.10 N/A N/A 5.581±0.00 3.764±0.01 3.675±0.00
ENSMUST00000099502 N/A N/A N/A 3.745±0.39 N/A N/A N/A N/A 0.658±0.09 N/A N/A N/A 1.739±0.14 0.841±0.00
ENSMUST00000113827 7.578±3.54 18.840±14.32 N/A 58.733±1.28 11.752±6.02 8.448±3.66 8.569±0.45 4.914±0.62 4.348±0.62 7.774±0.57 N/A 19.668±9.07 9.533±2.65 5.369±1.20
ENSMUST00000113829 1.129±0.27 2.067±0.12 2.941±0.01 3.423±0.52 2.972±0.50 1.840±0.28 1.512±0.56 0.830±0.42 0.817±0.31 2.882±0.87 1.263±0.29 4.463±1.19 2.894±0.99 3.522±1.02
ENSMUST00000124370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000157037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022915 ENSMUST00000143671 0.175±0.00 0.117±0.01 0.086±0.02 0.338±0.01 0.110±0.04 0.121±0.00 0.055±0.00 0.144±0.09 0.096±0.06 0.066±0.00 0.086±0.00 0.275±0.13 0.124±0.09 3.812±1.04
ENSMUSG00000040681 ENSMUST00000050884 27.064±14.21 21.921±13.24 52.787±14.68 45.437±22.62 17.333±4.55 16.419±6.63 7.609±0.74 20.801±3.99 16.548±6.90 34.824±3.08 4.051±0.50 67.280±35.53 103.668±31.56 7.833±2.60
ENSMUST00000133885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.037±0.00
ENSMUST00000142179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086093 ENSMUST00000137315 N/A N/A 0.015±0.00 0.034±0.02 N/A N/A N/A 0.162±0.00 N/A N/A N/A N/A N/A 2.833±1.05

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