C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain and WD repeat domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113829 Brwd1-001 ENSMUSG00000022914 10090 - 16:95999271-96082447 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113829
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113829 1.129±0.27 2.067±0.12 2.941±0.01 3.423±0.52 2.972±0.50 1.840±0.28 1.512±0.56 0.830±0.42 0.817±0.31 2.882±0.87 1.263±0.29 4.463±1.19 2.894±0.99 3.522±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UB CIL_0007UB_0002 VISTA 16:95547910-96149564
CIL_0003GK CIL_0003GK_0002 CGP 16:95979933-96082526
CIL_0004KG CIL_0004KG_0002 CGP 16:95992092-96127729

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007010 ISS cytoskeleton organization
GO:0008360 ISS regulation of cell shape

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333229 BRWD1-001 protein_coding Homo_sapiens 0 5426
ENST00000341322 BRWD1-004 protein_coding Homo_sapiens 0 571
ENST00000342449 BRWD1-002 protein_coding Homo_sapiens 0 5391
ENST00000380800 BRWD1-016 protein_coding Homo_sapiens 0 5404
ENST00000401091 RP4-597A16.3-001 processed_pseudogene Homo_sapiens 0 350
ENST00000412604 BRWD1-015 nonsense_mediated_decay Homo_sapiens 0 1897
ENST00000424441 BRWD1-010 protein_coding Homo_sapiens 0 985
ENST00000430093 BRWD1-012 nonsense_mediated_decay Homo_sapiens 0 1026
ENST00000445245 BRWD1-013 nonsense_mediated_decay Homo_sapiens 0 955
ENST00000445668 BRWD1-011 nonsense_mediated_decay Homo_sapiens 0 1441
ENST00000446924 BRWD1-009 nonsense_mediated_decay Homo_sapiens 0 1973
ENST00000455867 BRWD1-014 protein_coding Homo_sapiens 0 1677
ENST00000470108 BRWD1-008 processed_transcript Homo_sapiens 0 390
ENST00000473813 BRWD1-006 retained_intron Homo_sapiens 0 564
ENST00000484090 BRWD1-005 retained_intron Homo_sapiens 0 215
ENST00000491564 BRWD1-007 retained_intron Homo_sapiens 0 305
ENST00000546823 RP11-654D12.1-001 processed_pseudogene Homo_sapiens 0 331

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