C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003GK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183527-ENSG00000185658 CGP 9606 21:39174769-39321559
GeneTranscriptPositionBiotype
ENSG00000183527 (PSMG1)
proteasome (prosome, macropain) assembly chaperone 1 		ENST00000331573 (PSMG1-001) 39174769-39183851 protein_coding
ENST00000380900 (PSMG1-002) 39175590-39183488 protein_coding
ENST00000411828 (PSMG1-005) 39175588-39183287 nonsense_mediated_decay
ENST00000431628 (PSMG1-006) 39175590-39183385 nonsense_mediated_decay
ENST00000481921 (PSMG1-004) 39175458-39178820 retained_intron
ENSG00000185658 (BRWD1)
bromodomain and WD repeat domain containing 1 		ENST00000333229 (BRWD1-001) 39184176-39313819 protein_coding
ENST00000341322 (BRWD1-004) 39296437-39313642 protein_coding
ENST00000342449 (BRWD1-002) 39190219-39313570 protein_coding
ENST00000380800 (BRWD1-016) 39193817-39313590 protein_coding
ENST00000412604 (BRWD1-015) 39236719-39280213 nonsense_mediated_decay
ENST00000424441 (BRWD1-010) 39202366-39229392 protein_coding
ENST00000430093 (BRWD1-012) 39236718-39280213 nonsense_mediated_decay
ENST00000445245 (BRWD1-013) 39236718-39280213 nonsense_mediated_decay
ENST00000445668 (BRWD1-011) 39236718-39280213 nonsense_mediated_decay
ENST00000446924 (BRWD1-009) 39187246-39264941 nonsense_mediated_decay
ENST00000455867 (BRWD1-014) 39236719-39280213 protein_coding
ENST00000470108 (BRWD1-008) 39298090-39321559 processed_transcript
ENST00000473813 (BRWD1-006) 39209786-39218660 retained_intron
ENST00000484090 (BRWD1-005) 39312563-39313301 retained_intron
ENST00000491564 (BRWD1-007) 39199419-39200496 retained_intron
ENST00000496759 (BRWD1-003) 39278497-39280207 retained_intron
ENSG00000229623 (METTL21AP1)
methyltransferase like 21A pseudogene 1 		ENST00000438852 (METTL21AP1-001) 39235386-39236020 processed_pseudogene
ENSG00000232608 (TIMM9P2)
translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 2 		ENST00000419324 (TIMM9P2-001) 39216624-39217506 processed_pseudogene
ENSG00000237373 (BRWD1-IT1)
BRWD1 intronic transcript 1 (non-protein coding) 		ENST00000435608 (BRWD1-IT1-001) 39217093-39219805 sense_overlapping
ENSG00000238141 (BRWD1-AS1)
BRWD1 antisense RNA 1 		ENST00000423274 (BRWD1-AS1-001) 39315707-39323218 antisense
ENSG00000255568 (BRWD1-AS2)
BRWD1 antisense RNA 2 		ENST00000603064 (BRWD1-AS2-001) 39313935-39314962 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003GK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022913-ENSMUSG00000022914 CGP 10090 16:95979933-96082526
GeneTranscriptPositionBiotype
ENSMUSG00000022913 (Psmg1)
proteasome (prosome, macropain) assembly chaperone 1 		ENSMUST00000023630 (Psmg1-001) 95979933-95990960 protein_coding
ENSMUST00000117044 (Psmg1-003) 95980037-95990890 protein_coding
ENSMUST00000149066 (Psmg1-004) 95980037-95990890 nonsense_mediated_decay
ENSMUST00000150692 (Psmg1-002) 95987986-95989898 retained_intron
ENSMUSG00000022914 (Brwd1)
bromodomain and WD repeat domain containing 1 		ENSMUST00000023631 (Brwd1-002) 95992449-96082447 protein_coding
ENSMUST00000099502 (Brwd1-201) 95992092-96082428 protein_coding
ENSMUST00000113827 (Brwd1-003) 96066668-96082526 protein_coding
ENSMUST00000113829 (Brwd1-001) 95999271-96082447 protein_coding
ENSMUST00000124370 (Brwd1-014) 96035862-96061099 protein_coding
ENSMUST00000126629 (Brwd1-011) 96046222-96047443 retained_intron
ENSMUST00000127777 (Brwd1-012) 96009524-96011877 retained_intron
ENSMUST00000130823 (Brwd1-010) 96019419-96019871 retained_intron
ENSMUST00000131322 (Brwd1-016) 96003860-96047160 nonsense_mediated_decay
ENSMUST00000139566 (Brwd1-013) 96035986-96061064 nonsense_mediated_decay
ENSMUST00000147655 (Brwd1-005) 96016108-96017805 retained_intron
ENSMUST00000148432 (Brwd1-004) 96033045-96035630 retained_intron
ENSMUST00000152197 (Brwd1-015) 96011710-96027406 protein_coding
ENSMUST00000153398 (Brwd1-009) 96002435-96082447 protein_coding
ENSMUST00000156622 (Brwd1-008) 96005025-96009252 processed_transcript
ENSMUST00000157037 (Brwd1-006) 96005418-96009159 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003GK_0001ENSG00000183527ENST00000331573ENST00000380900ENST00000411828ENST00000431628ENST00000481921ENSG00000185658ENST00000333229ENST00000341322ENST00000342449ENST00000380800ENST00000412604ENST00000424441ENST00000430093ENST00000445245ENST00000445668ENST00000446924ENST00000455867ENST00000470108ENST00000473813ENST00000484090ENST00000491564ENST00000496759ENSG00000229623ENST00000438852ENSG00000232608ENST00000419324ENSG00000237373ENST00000435608ENSG00000238141ENST00000423274ENSG00000255568ENST00000603064CIL_0003GK_0002ENSMUSG00000022913ENSMUST00000023630ENSMUST00000117044ENSMUST00000149066ENSMUST00000150692ENSMUSG00000022914ENSMUST00000023631ENSMUST00000099502ENSMUST00000113827ENSMUST00000113829ENSMUST00000124370ENSMUST00000126629ENSMUST00000127777ENSMUST00000130823ENSMUST00000131322ENSMUST00000139566ENSMUST00000147655ENSMUST00000148432ENSMUST00000152197ENSMUST00000153398ENSMUST00000156622ENSMUST00000157037
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003GK_0001ENSG00000183527ENST00000331573ENST00000380900ENST00000411828ENST00000431628ENST00000481921ENSG00000185658ENST00000333229ENST00000341322ENST00000342449ENST00000380800ENST00000445245ENST00000446924ENSG00000229623ENST00000438852ENSG00000232608ENST00000419324ENSG00000237373ENST00000435608ENSG00000238141ENST00000423274ENSG00000255568ENST00000603064CIL_0003GK_0002ENSMUSG00000022913ENSMUST00000023630ENSMUST00000117044ENSMUST00000149066ENSMUST00000150692ENSMUSG00000022914ENSMUST00000023631ENSMUST00000099502ENSMUST00000113827ENSMUST00000113829
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183527 ENST00000331573 N/A N/A 0.233±0.00 1.333±0.57 0.784±0.00 0.914±0.00 0.383±0.00 N/A N/A N/A N/A 3.525±0.00 0.676±0.00 N/A
ENST00000380900 3.970±0.00 8.074±0.00 2.012±0.00 6.853±0.00 5.162±0.00 2.602±1.34 2.173±0.00 9.079±0.00 4.209±3.28 2.118±1.53 3.504±2.92 6.217±3.21 5.935±2.13 48.491±6.28
ENST00000411828 N/A N/A 0.784±0.00 2.464±0.00 0.871±0.00 3.364±0.00 1.178±0.68 N/A 2.253±0.00 N/A N/A 9.617±7.04 5.152±0.48 44.468±0.00
ENST00000431628 3.382±0.00 7.415±0.00 N/A 2.965±0.00 3.908±0.00 6.991±0.00 1.563±0.00 5.263±0.01 4.590±0.00 1.409±0.62 10.635±0.00 8.988±2.14 6.180±3.25 36.903±0.00
ENST00000481921 1.708±0.00 5.667±0.00 N/A 4.562±2.34 3.317±0.00 2.527±0.00 2.296±0.00 3.534±0.27 4.776±0.00 0.830±0.37 2.424±0.97 13.861±11.99 9.653±4.65 53.843±27.15
ENSG00000185658 ENST00000333229 N/A N/A 2.225±0.00 3.127±0.00 2.513±0.00 4.221±0.00 1.054±0.00 1.874±0.00 3.684±0.00 3.631±0.00 0.889±0.58 2.135±0.60 0.317±0.00 3.218±0.00
ENST00000341322 3.485±0.00 2.299±0.00 N/A 21.142±2.92 3.539±0.00 2.449±0.00 3.162±0.00 5.648±0.00 1.698±0.00 4.969±0.00 2.228±0.00 5.318±1.25 3.713±0.14 4.752±0.00
ENST00000342449 1.418±0.00 0.520±0.00 1.730±0.00 1.687±0.13 3.311±1.91 1.827±1.36 1.158±0.28 1.643±0.22 3.153±2.91 4.069±2.69 N/A 1.827±1.16 0.945±0.00 2.679±0.96
ENST00000380800 N/A N/A N/A N/A N/A 0.630±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.373±0.00 N/A N/A N/A
ENST00000445668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.483±0.00 N/A
ENST00000455867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229623 ENST00000438852 0.176±0.00 0.044±0.00 1.814±0.00 0.161±0.11 0.425±0.25 1.146±1.13 0.705±0.64 0.494±0.00 1.171±0.00 2.368±0.00 0.286±0.00 0.258±0.00 0.057±0.00 0.123±0.00
ENSG00000232608 ENST00000419324 0.040±0.00 N/A N/A 0.435±0.00 0.329±0.00 0.106±0.00 0.185±0.00 N/A 1.383±0.00 0.400±0.23 N/A 0.176±0.00 N/A 0.094±0.00
ENSG00000237373 ENST00000435608 N/A 0.192±0.00 1.362±0.00 N/A 0.180±0.00 1.921±0.00 0.257±0.00 1.447±0.00 0.972±0.00 1.391±0.00 1.238±0.00 N/A N/A 0.117±0.00
ENSG00000238141 ENST00000423274 N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A 0.056±0.00 0.141±0.00 N/A 0.361±0.00 N/A 0.949±0.27
ENSG00000255568 ENST00000603064 0.387±0.00 0.586±0.00 N/A 0.462±0.00 0.799±0.00 N/A 0.277±0.00 0.750±0.00 0.229±0.01 0.045±0.00 0.127±0.00 0.398±0.28 0.130±0.04 15.310±7.86
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022913 ENSMUST00000023630 9.144±1.26 4.889±2.40 N/A 12.323±3.95 6.602±1.75 5.025±0.59 9.994±1.03 12.571±1.76 20.204±8.66 4.408±0.50 5.842±0.58 7.949±3.79 16.726±8.46 12.102±2.80
ENSMUST00000117044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.754±0.00 N/A N/A
ENSMUST00000149066 5.348±1.91 3.230±1.05 N/A N/A 7.291±5.87 1.715±0.00 N/A 4.340±1.11 N/A 1.617±0.27 2.233±0.50 5.548±2.49 3.018±0.00 N/A
ENSMUST00000150692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.089±0.00 N/A N/A
ENSMUSG00000022914 ENSMUST00000023631 N/A N/A N/A 3.115±0.00 N/A 1.275±0.00 N/A 0.865±0.00 0.539±0.10 N/A N/A 5.581±0.00 3.764±0.01 3.675±0.00
ENSMUST00000099502 N/A N/A N/A 3.745±0.39 N/A N/A N/A N/A 0.658±0.09 N/A N/A N/A 1.739±0.14 0.841±0.00
ENSMUST00000113827 7.578±3.54 18.840±14.32 N/A 58.733±1.28 11.752±6.02 8.448±3.66 8.569±0.45 4.914±0.62 4.348±0.62 7.774±0.57 N/A 19.668±9.07 9.533±2.65 5.369±1.20
ENSMUST00000113829 1.129±0.27 2.067±0.12 2.941±0.01 3.423±0.52 2.972±0.50 1.840±0.28 1.512±0.56 0.830±0.42 0.817±0.31 2.882±0.87 1.263±0.29 4.463±1.19 2.894±0.99 3.522±1.02
ENSMUST00000124370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000157037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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