C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain and WD repeat domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113827 Brwd1-003 ENSMUSG00000022914 10090 - 16:96066668-96082526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000113827
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000113827 7.578±3.54 18.840±14.32 58.733±1.28 11.752±6.02 8.448±3.66 8.569±0.45 4.914±0.62 4.348±0.62 7.774±0.57 19.668±9.07 9.533±2.65 5.369±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UB CIL_0007UB_0002 VISTA 16:95547910-96149564
CIL_0003GK CIL_0003GK_0002 CGP 16:95979933-96082526
CIL_0004KG CIL_0004KG_0002 CGP 16:95992092-96127729

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333229 BRWD1-001 protein_coding Homo_sapiens 0 571
ENST00000341322 BRWD1-004 protein_coding Homo_sapiens 0 636
ENST00000342449 BRWD1-002 protein_coding Homo_sapiens 0 536
ENST00000380800 BRWD1-016 protein_coding Homo_sapiens 0 549
ENST00000381998 MSR1-003 protein_coding Homo_sapiens 0.00001 57
ENST00000401091 RP4-597A16.3-001 processed_pseudogene Homo_sapiens 0 361
ENST00000470108 BRWD1-008 processed_transcript Homo_sapiens 0 455
ENST00000484090 BRWD1-005 retained_intron Homo_sapiens 0 215
ENST00000546823 RP11-654D12.1-001 processed_pseudogene Homo_sapiens 0 331

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