C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain and WD repeat domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185658 BRWD1 9606 - 21:39184176-39321559 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333229 BRWD1-001 39184176-39313819 protein_coding
  ENST00000341322 BRWD1-004 39296437-39313642 protein_coding
  ENST00000342449 BRWD1-002 39190219-39313570 protein_coding
  ENST00000380800 BRWD1-016 39193817-39313590 protein_coding
  ENST00000412604 BRWD1-015 39236719-39280213 nonsense_mediated_decay
  ENST00000424441 BRWD1-010 39202366-39229392 protein_coding
  ENST00000430093 BRWD1-012 39236718-39280213 nonsense_mediated_decay
  ENST00000445245 BRWD1-013 39236718-39280213 nonsense_mediated_decay
  ENST00000445668 BRWD1-011 39236718-39280213 nonsense_mediated_decay
  ENST00000446924 BRWD1-009 39187246-39264941 nonsense_mediated_decay
  ENST00000455867 BRWD1-014 39236719-39280213 protein_coding
  ENST00000470108 BRWD1-008 39298090-39321559 processed_transcript
  ENST00000473813 BRWD1-006 39209786-39218660 retained_intron
  ENST00000484090 BRWD1-005 39312563-39313301 retained_intron
  ENST00000491564 BRWD1-007 39199419-39200496 retained_intron
  ENST00000496759 BRWD1-003 39278497-39280207 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333229ENST00000341322ENST00000342449ENST00000380800ENST00000445245ENST00000446924
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333229 N/A N/A 2.225±0.00 3.127±0.00 2.513±0.00 4.221±0.00 1.054±0.00 1.874±0.00 3.684±0.00 3.631±0.00 0.889±0.58 2.135±0.60 0.317±0.00 3.218±0.00
ENST00000341322 3.485±0.00 2.299±0.00 N/A 21.142±2.92 3.539±0.00 2.449±0.00 3.162±0.00 5.648±0.00 1.698±0.00 4.969±0.00 2.228±0.00 5.318±1.25 3.713±0.14 4.752±0.00
ENST00000342449 1.418±0.00 0.520±0.00 1.730±0.00 1.687±0.13 3.311±1.91 1.827±1.36 1.158±0.28 1.643±0.22 3.153±2.91 4.069±2.69 N/A 1.827±1.16 0.945±0.00 2.679±0.96
ENST00000380800 N/A N/A N/A N/A N/A 0.630±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.373±0.00 N/A N/A N/A
ENST00000446924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.483±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UB CIL_0007UB_0001 VISTA 21:38689433-39291200
CIL_0003GK CIL_0003GK_0001 CGP 21:39174769-39321559
CIL_0004KG CIL_0004KG_0001 CGP 21:39184176-39349647

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007010 IMP cytoskeleton organization
GO:0008360 IMP regulation of cell shape

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074747 brwd1 bromodomain and WD repeat domain containing 1 protein_coding Danio_rerio
ENSMUSG00000022914 Brwd1 bromodomain and WD repeat domain containing 1 protein_coding Mus_musculus

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