C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptojanin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022973 Synj1 10090 - 16:90936092-91011308 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000118246 Synj1-001 90960492-91011061 retained_intron
  ENSMUST00000118390 Synj1-003 90938240-91011113 protein_coding
  ENSMUST00000121759 Synj1-002 90936092-91011308 protein_coding
  ENSMUST00000125032 Synj1-005 90944476-90950424 protein_coding
  ENSMUST00000129041 Synj1-006 90938657-90946655 processed_transcript
  ENSMUST00000129743 Synj1-009 90938803-90944871 protein_coding
  ENSMUST00000130813 Synj1-010 90964264-91011060 protein_coding
  ENSMUST00000154276 Synj1-011 90936106-90950419 protein_coding
  ENSMUST00000156140 Synj1-004 91009314-91011063 retained_intron
  ENSMUST00000170853 Synj1-201 90936101-91011095 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000118390ENSMUST00000121759ENSMUST00000154276ENSMUST00000170853
Transcript ID Adipose Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000118390 N/A N/A 32.013±0.00 N/A N/A N/A 4.141±0.00 N/A
ENSMUST00000121759 1.885±0.00 N/A 9.556±1.73 2.271±1.24 0.682±0.15 1.273±0.15 N/A 2.162±0.24
ENSMUST00000154276 2.738±0.00 5.153±0.00 15.436±0.29 5.110±2.89 1.158±0.00 2.776±0.35 3.346±0.13 2.416±0.00
ENSMUST00000170853 N/A N/A 14.425±0.00 0.611±0.00 N/A 1.087±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0002 VISTA 16:90804484-91407069
CIL_00087M CIL_00087M_0002 VISTA 16:90839145-91442270
CIL_0009BQ CIL_0009BQ_0002 VISTA 16:90840152-91441411
CIL_000089 CIL_000089_0002 CGP 16:90936092-91044543

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0004439 IMP phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0005515 IPI protein binding
GO:0006836 IMP neurotransmitter transport
GO:0007612 IMP learning
GO:0016082 IMP synaptic vesicle priming
GO:0016191 IMP synaptic vesicle uncoating
GO:0030117 IDA membrane coat
GO:0030118 TAS clathrin coat
GO:0034595 IMP phosphatidylinositol phosphate 5-phosphatase activity
GO:0036465 TAS synaptic vesicle recycling
GO:0046488 IMP phosphatidylinositol metabolic process
GO:0046855 IMP inositol phosphate dephosphorylation
GO:0046856 IMP phosphatidylinositol dephosphorylation
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0048488 IMP synaptic vesicle endocytosis
GO:0048489 IMP synaptic vesicle transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025011 synj1 synaptojanin 1 protein_coding Danio_rerio
ENSG00000159082 SYNJ1 synaptojanin 1 protein_coding Homo_sapiens

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