C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121759 Synj1-002 ENSMUSG00000022973 10090 - 16:90936092-91011308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainLiverMuscleOvaryTestisENSMUST00000121759
Transcript ID Adipose Brain Liver Muscle Ovary Testis
ENSMUST00000121759 1.885±0.00 9.556±1.73 2.271±1.24 0.682±0.15 1.273±0.15 2.162±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0002 VISTA 16:90804484-91407069
CIL_00087M CIL_00087M_0002 VISTA 16:90839145-91442270
CIL_0009BQ CIL_0009BQ_0002 VISTA 16:90840152-91441411
CIL_000089 CIL_000089_0002 CGP 16:90936092-91044543

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0004439 IMP phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0005515 IPI protein binding
GO:0006836 IMP neurotransmitter transport
GO:0007612 IMP learning
GO:0016082 IMP synaptic vesicle priming
GO:0016191 IMP synaptic vesicle uncoating
GO:0030117 IDA membrane coat
GO:0030118 TAS clathrin coat
GO:0034595 IMP phosphatidylinositol phosphate 5-phosphatase activity
GO:0036465 TAS synaptic vesicle recycling
GO:0046488 IMP phosphatidylinositol metabolic process
GO:0046855 IMP inositol phosphate dephosphorylation
GO:0046856 IMP phosphatidylinositol dephosphorylation
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0048488 IMP synaptic vesicle endocytosis
GO:0048489 IMP synaptic vesicle transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357345 SYNJ1-201 protein_coding Homo_sapiens 0 4191
ENST00000382491 SYNJ1-202 protein_coding Homo_sapiens 0 4089
ENST00000382499 SYNJ1-001 protein_coding Homo_sapiens 0 5208
ENST00000429236 SYNJ1-002 protein_coding Homo_sapiens 0 2531
ENST00000433931 SYNJ1-004 protein_coding Homo_sapiens 0 5289
ENST00000438952 SYNJ1-003 protein_coding Homo_sapiens 0 243
ENST00000456084 SYNJ1-006 protein_coding Homo_sapiens 0 725
ENST00000464778 SYNJ1-007 processed_transcript Homo_sapiens 0 619
ENST00000467445 SYNJ1-005 retained_intron Homo_sapiens 0 337

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