C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154276 Synj1-011 ENSMUSG00000022973 10090 - 16:90936106-90950419 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000154276
Transcript ID Adipose Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000154276 2.738±0.00 5.153±0.00 15.436±0.29 5.110±2.89 1.158±0.00 2.776±0.35 3.346±0.13 2.416±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0002 VISTA 16:90804484-91407069
CIL_00087M CIL_00087M_0002 VISTA 16:90839145-91442270
CIL_0009BQ CIL_0009BQ_0002 VISTA 16:90840152-91441411
CIL_000089 CIL_000089_0002 CGP 16:90936092-91044543

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357345 SYNJ1-201 protein_coding Homo_sapiens 0 1031
ENST00000382491 SYNJ1-202 protein_coding Homo_sapiens 0 243
ENST00000382499 SYNJ1-001 protein_coding Homo_sapiens 0 243
ENST00000438952 SYNJ1-003 protein_coding Homo_sapiens 0 1031

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