C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000089_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159082-ENSG00000159086 CGP 9606 21:32628759-32771858
GeneTranscriptPositionBiotype
ENSG00000159082 (SYNJ1)
synaptojanin 1 		ENST00000357345 (SYNJ1-201) 32628759-32727939 protein_coding
ENST00000382491 (SYNJ1-202) 32628759-32728040 protein_coding
ENST00000382499 (SYNJ1-001) 32628764-32728040 protein_coding
ENST00000416083 (SYNJ1-008) 32639014-32645719 protein_coding
ENST00000418301 (SYNJ1-009) 32631778-32641945 protein_coding
ENST00000429236 (SYNJ1-002) 32665986-32727939 protein_coding
ENST00000433931 (SYNJ1-004) 32630990-32728048 protein_coding
ENST00000438952 (SYNJ1-003) 32628763-32645710 protein_coding
ENST00000456084 (SYNJ1-006) 32695226-32726942 protein_coding
ENST00000464778 (SYNJ1-007) 32656691-32658561 processed_transcript
ENST00000467445 (SYNJ1-005) 32650184-32654101 retained_intron
ENSG00000159086 (PAXBP1)
PAX3 and PAX7 binding protein 1 		ENST00000290178 (PAXBP1-005) 32741393-32771668 protein_coding
ENST00000331923 (PAXBP1-001) 32733899-32771858 protein_coding
ENST00000421049 (PAXBP1-008) 32748559-32755311 nonsense_mediated_decay
ENST00000443785 (PAXBP1-006) 32734820-32771687 nonsense_mediated_decay
ENST00000445049 (PAXBP1-009) 32741419-32743268 nonsense_mediated_decay
ENST00000464256 (PAXBP1-007) 32759402-32771792 retained_intron
ENST00000466846 (PAXBP1-002) 32733900-32756794 retained_intron
ENST00000472588 (PAXBP1-004) 32756342-32771668 processed_transcript
ENST00000497873 (PAXBP1-003) 32734826-32752124 retained_intron
ENSG00000238197 (PAXBP1-AS1)
PAXBP1 antisense RNA 1 		ENST00000440052 (PAXBP1-AS1-002) 32728139-32743122 antisense
ENST00000455170 (PAXBP1-AS1-003) 32730352-32737473 antisense
ENST00000458479 (PAXBP1-AS1-001) 32728115-32732916 antisense
ENSG00000273662 (AP000279.1)
 ENST00000614940 (AP000279.1-201) 32730987-32731044 miRNA
CIL_000089_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022973-ENSMUSG00000022974 CGP 10090 16:90936092-91044543
GeneTranscriptPositionBiotype
ENSMUSG00000022974 (Paxbp1)
PAX3 and PAX7 binding protein 1 		ENSMUST00000023698 (Paxbp1-002) 91014916-91044164 nonsense_mediated_decay
ENSMUST00000118522 (Paxbp1-001) 91014037-91044543 protein_coding
ENSMUST00000124653 (Paxbp1-004) 91030449-91034892 retained_intron
ENSMUST00000127002 (Paxbp1-007) 91031564-91044354 processed_transcript
ENSMUST00000128922 (Paxbp1-005) 91025675-91027638 retained_intron
ENSMUST00000145136 (Paxbp1-008) 91025556-91030514 nonsense_mediated_decay
ENSMUST00000146281 (Paxbp1-003) 91024811-91030816 retained_intron
ENSMUST00000150397 (Paxbp1-006) 91016849-91019231 processed_transcript
ENSMUSG00000085279 (Gm15965)
predicted gene 15965 		ENSMUST00000123318 (Gm15965-001) 90983907-90987237 antisense
ENSMUSG00000093256 (Gm22933)
predicted gene, 22933 		ENSMUST00000175515 (Gm22933-201) 90953795-90953868 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000089_0001ENSG00000159082ENST00000357345ENST00000382491ENST00000382499ENST00000416083ENST00000418301ENST00000429236ENST00000433931ENST00000438952ENST00000456084ENST00000464778ENST00000467445ENSG00000159086ENST00000290178ENST00000331923ENST00000421049ENST00000443785ENST00000445049ENST00000464256ENST00000466846ENST00000472588ENST00000497873ENSG00000238197ENST00000440052ENST00000455170ENST00000458479ENSG00000273662ENST00000614940CIL_000089_0002ENSMUSG00000022974ENSMUST00000023698ENSMUST00000118522ENSMUST00000124653ENSMUST00000127002ENSMUST00000128922ENSMUST00000145136ENSMUST00000146281ENSMUST00000150397ENSMUSG00000085279ENSMUST00000123318ENSMUSG00000093256ENSMUST00000175515
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000089_0001ENSG00000159082ENST00000357345ENST00000382491ENST00000382499ENST00000429236ENST00000433931ENST00000438952ENST00000467445ENSG00000159086ENST00000290178ENST00000331923ENST00000443785ENST00000464256ENST00000466846ENST00000472588ENST00000497873ENSG00000238197ENST00000440052ENSG00000273662ENST00000614940CIL_000089_0002ENSMUSG00000022974ENSMUST00000023698ENSMUST00000118522ENSMUST00000127002ENSMUSG00000085279ENSMUST00000123318ENSMUSG00000093256ENSMUST00000175515
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000159082 ENST00000357345 N/A N/A N/A 5.767±1.07 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000382491 1.575±0.00 N/A N/A N/A N/A 0.897±0.00 N/A 0.940±0.74 N/A 0.773±0.16 N/A 0.603±0.34 0.197±0.00 1.728±0.00
ENST00000382499 N/A N/A N/A 3.400±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429236 N/A N/A N/A N/A N/A N/A N/A 0.988±0.00 0.682±0.34 1.966±0.00 N/A 1.024±0.05 1.394±0.00 5.332±0.00
ENST00000433931 N/A N/A N/A 6.382±0.00 N/A N/A 0.350±0.00 N/A N/A N/A 0.601±0.00 N/A N/A 1.632±0.00
ENST00000438952 1.329±0.00 0.911±0.00 N/A 16.271±0.00 1.238±0.00 1.018±0.00 0.682±0.00 2.797±0.00 0.759±0.00 1.386±0.00 1.157±0.00 0.389±0.00 1.226±0.38 0.966±0.00
ENST00000456084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.700±0.00 N/A N/A N/A
ENSG00000159086 ENST00000290178 N/A N/A N/A 1.518±0.00 N/A N/A N/A N/A N/A N/A 1.032±0.16 N/A 0.882±0.00 7.438±0.00
ENST00000331923 N/A 2.479±0.00 N/A 2.546±0.00 1.026±0.00 3.224±0.00 1.413±0.00 3.854±0.00 1.950±0.00 1.721±0.37 0.884±0.64 5.580±3.85 1.210±0.32 3.858±0.46
ENST00000421049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443785 N/A N/A N/A N/A 2.041±0.00 N/A 0.425±0.00 N/A 1.252±0.00 N/A N/A 3.624±0.00 0.455±0.00 N/A
ENST00000445049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464256 N/A N/A 4.181±0.00 1.834±0.00 N/A N/A N/A 1.511±0.00 1.333±0.00 N/A N/A 7.669±0.00 N/A N/A
ENST00000466846 0.729±0.00 2.097±0.00 0.723±0.00 1.517±0.53 1.627±0.61 1.200±0.57 0.637±0.28 0.683±0.00 0.711±0.00 0.979±0.37 0.475±0.00 1.618±0.44 0.258±0.00 2.191±0.86
ENST00000472588 N/A N/A 1.234±0.00 N/A N/A 2.295±0.00 N/A N/A 2.252±0.00 N/A N/A N/A 1.643±0.00 5.816±0.00
ENST00000497873 N/A N/A N/A N/A 2.339±0.00 N/A N/A N/A N/A 2.402±0.00 N/A N/A N/A N/A
ENSG00000238197 ENST00000440052 N/A N/A N/A 1.598±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000273662 ENST00000614940 N/A 2.180±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022974 ENSMUST00000023698 N/A N/A 8.919±0.73 N/A 5.222±0.00 N/A 1.773±0.00 N/A 10.700±3.22 N/A 2.239±0.38 18.678±2.22 11.648±5.25 7.288±2.55
ENSMUST00000118522 3.885±0.12 5.403±1.72 3.775±0.00 13.603±0.00 4.849±1.63 5.943±1.64 2.131±0.41 2.469±0.47 5.477±5.08 6.765±1.49 1.014±0.19 8.264±3.15 5.483±0.63 5.586±0.60
ENSMUST00000124653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.704±0.00 N/A 38.547±0.00
ENSMUST00000128922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085279 ENSMUST00000123318 1.243±0.35 1.766±0.63 0.997±0.15 1.753±0.15 1.343±0.46 1.620±0.24 0.657±0.10 1.073±0.50 0.838±0.39 1.529±0.24 0.149±0.05 1.653±0.42 1.203±0.40 1.413±0.16
ENSMUSG00000093256 ENSMUST00000175515 N/A N/A N/A N/A N/A 72339.252±25579.45 N/A 42492.602±0.00 N/A N/A N/A N/A N/A N/A

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