C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptojanin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159082 SYNJ1 9606 - 21:32628759-32728048 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357345 SYNJ1-201 32628759-32727939 protein_coding
  ENST00000382491 SYNJ1-202 32628759-32728040 protein_coding
  ENST00000382499 SYNJ1-001 32628764-32728040 protein_coding
  ENST00000416083 SYNJ1-008 32639014-32645719 protein_coding
  ENST00000418301 SYNJ1-009 32631778-32641945 protein_coding
  ENST00000429236 SYNJ1-002 32665986-32727939 protein_coding
  ENST00000433931 SYNJ1-004 32630990-32728048 protein_coding
  ENST00000438952 SYNJ1-003 32628763-32645710 protein_coding
  ENST00000456084 SYNJ1-006 32695226-32726942 protein_coding
  ENST00000464778 SYNJ1-007 32656691-32658561 processed_transcript
  ENST00000467445 SYNJ1-005 32650184-32654101 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357345ENST00000382491ENST00000382499ENST00000429236ENST00000433931ENST00000438952ENST00000467445
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357345 N/A N/A 5.767±1.07 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000382491 1.575±0.00 N/A N/A N/A 0.897±0.00 N/A 0.940±0.74 N/A 0.773±0.16 N/A 0.603±0.34 0.197±0.00 1.728±0.00
ENST00000382499 N/A N/A 3.400±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429236 N/A N/A N/A N/A N/A N/A 0.988±0.00 0.682±0.34 1.966±0.00 N/A 1.024±0.05 1.394±0.00 5.332±0.00
ENST00000433931 N/A N/A 6.382±0.00 N/A N/A 0.350±0.00 N/A N/A N/A 0.601±0.00 N/A N/A 1.632±0.00
ENST00000438952 1.329±0.00 0.911±0.00 16.271±0.00 1.238±0.00 1.018±0.00 0.682±0.00 2.797±0.00 0.759±0.00 1.386±0.00 1.157±0.00 0.389±0.00 1.226±0.38 0.966±0.00
ENST00000467445 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.700±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0001 VISTA 21:32549146-33151638
CIL_00087M CIL_00087M_0001 VISTA 21:32616647-33220574
CIL_0009BQ CIL_0009BQ_0001 VISTA 21:32618474-33219807
CIL_000089 CIL_000089_0001 CGP 21:32628759-32771858

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0004439 ISS phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0004445 TAS inositol-polyphosphate 5-phosphatase activity
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0006644 TAS phospholipid metabolic process
GO:0006661 TAS phosphatidylinositol biosynthetic process
GO:0006796 TAS phosphate-containing compound metabolic process
GO:0006836 ISS neurotransmitter transport
GO:0007612 IEA learning
GO:0008219 IEA cell death
GO:0016082 ISS synaptic vesicle priming
GO:0016191 ISS synaptic vesicle uncoating
GO:0030117 ISS membrane coat
GO:0034595 ISS phosphatidylinositol phosphate 5-phosphatase activity
GO:0042578 IEA phosphoric ester hydrolase activity
GO:0043647 TAS inositol phosphate metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046488 ISS phosphatidylinositol metabolic process
GO:0046855 ISS inositol phosphate dephosphorylation
GO:0046856 ISS:IEA phosphatidylinositol dephosphorylation
GO:0048488 ISS synaptic vesicle endocytosis
GO:0048489 ISS synaptic vesicle transport
GO:1901632 TAS regulation of synaptic vesicle membrane organization
GO:1903390 TAS positive regulation of synaptic vesicle uncoating

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025011 synj1 synaptojanin 1 protein_coding Danio_rerio
ENSMUSG00000022973 Synj1 synaptojanin 1 protein_coding Mus_musculus

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