Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	U1 small nuclear ribonucleoprotein C
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSMUSG00000024217	Snrpc	10090	+	17:27839974-27851968	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENSMUST00000071006		Snrpc-001	27839974-27851964	protein_coding
	ENSMUST00000137581		Snrpc-002	27840134-27851968	retained_intron

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000071006	16.660±3.65	58.052±2.36	30.330±1.12	34.585±19.90	29.123±12.97	34.741±2.56	14.699±3.58	19.203±1.58	41.319±31.49	26.636±1.87	33.554±1.75	41.933±6.01	57.812±32.30	55.693±22.89
ENSMUST00000137581	0.585±0.11	N/A	0.609±0.01	0.739±0.37	0.484±0.19	N/A	0.211±0.00	N/A	N/A	0.811±0.00	N/A	0.472±0.06	0.213±0.05	0.180±0.00

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_000258	CIL_000258_0002	CGP	17:27751232-27851968
CIL_000259	CIL_000259_0002	CGP	17:27839974-27900040

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000243	IEA	commitment complex
GO:0000387	IEA	spliceosomal snRNP assembly
GO:0000395	IEA	mRNA 5'-splice site recognition
GO:0003727	IEA	single-stranded RNA binding
GO:0003729	IEA	mRNA binding
GO:0005515	IEA	protein binding
GO:0005685	ISS	U1 snRNP
GO:0008270	IEA	zinc ion binding
GO:0015030	IEA	Cajal body
GO:0030619	IEA	U1 snRNA binding
GO:0042803	IEA	protein homodimerization activity
GO:0044822	IEA	poly(A) RNA binding
GO:0071004	IEA	U2-type prespliceosome

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000009871	snrpc	small nuclear ribonucleoprotein polypeptide C	protein_coding	Danio_rerio
ENSG00000124562	SNRPC	small nuclear ribonucleoprotein polypeptide C	protein_coding	Homo_sapiens

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