C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U1 small nuclear ribonucleoprotein C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071006 Snrpc-001 ENSMUSG00000024217 10090 + 17:27839974-27851964 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071006 16.660±3.65 58.052±2.36 30.330±1.12 34.585±19.90 29.123±12.97 34.741±2.56 14.699±3.58 19.203±1.58 41.319±31.49 26.636±1.87 33.554±1.75 41.933±6.01 57.812±32.30 55.693±22.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000258 CIL_000258_0002 CGP 17:27751232-27851968
CIL_000259 CIL_000259_0002 CGP 17:27839974-27900040

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000243 IEA commitment complex
GO:0000387 IEA spliceosomal snRNP assembly
GO:0000395 IEA mRNA 5'-splice site recognition
GO:0003727 IEA single-stranded RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IEA protein binding
GO:0005685 ISS U1 snRNP
GO:0008270 IEA zinc ion binding
GO:0015030 IEA Cajal body
GO:0030619 IEA U1 snRNA binding
GO:0042803 IEA protein homodimerization activity
GO:0044822 IEA poly(A) RNA binding
GO:0071004 IEA U2-type prespliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244520 SNRPC-001 protein_coding Homo_sapiens 0 693
ENST00000374017 SNRPC-002 protein_coding Homo_sapiens 0 645
ENST00000374018 SNRPC-003 protein_coding Homo_sapiens 0 562
ENST00000417250 SNRPCP9-001 processed_pseudogene Homo_sapiens 0 189
ENST00000424055 SNRPCP15-001 processed_pseudogene Homo_sapiens 4.2039e-45 183
ENST00000433292 SNRPCP1-001 processed_pseudogene Homo_sapiens 0 311
ENST00000474635 SNRPC-004 processed_transcript Homo_sapiens 0 462
ENST00000474888 SNRPCP3-001 processed_pseudogene Homo_sapiens 0 374
ENST00000481033 SNRPCP10-001 processed_pseudogene Homo_sapiens 0 211
ENST00000492453 SNRPCP11-001 processed_pseudogene Homo_sapiens 0 189
ENST00000504370 SNRPCP2-001 processed_pseudogene Homo_sapiens 0 503
ENST00000514820 SNRPCP8-001 processed_pseudogene Homo_sapiens 0 202
ENST00000520330 SNRPCP17-001 processed_pseudogene Homo_sapiens 9.80909e-45 182
ENST00000524498 SNRPCP14-001 processed_pseudogene Homo_sapiens 1.4013e-45 185
ENST00000528310 SNRPCP6-001 processed_pseudogene Homo_sapiens 0 206
ENST00000531775 SNRPCP5-001 processed_pseudogene Homo_sapiens 1.4013e-45 185
ENST00000588011 SNRPCP20-001 processed_pseudogene Homo_sapiens 1.99965e-42 174
ENST00000622868 RP11-90D4.4-001 processed_pseudogene Homo_sapiens 0 211

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