C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124562 SNRPC 9606 + 6:34757406-34773794 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000244520 SNRPC-001 34757406-34773794 protein_coding
  ENST00000374017 SNRPC-002 34757554-34773794 protein_coding
  ENST00000374018 SNRPC-003 34757525-34773714 protein_coding
  ENST00000474635 SNRPC-004 34757912-34773532 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000244520ENST00000374017ENST00000374018ENST00000474635
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000244520 17.711±0.00 40.440±0.00 2.299±0.00 15.239±6.49 12.589±5.86 11.041±2.64 25.564±12.81 16.740±3.82 15.352±9.82 10.634±6.58 22.046±8.80 36.853±15.39 45.852±12.61 48.170±10.82
ENST00000374017 N/A N/A 1.390±0.00 N/A N/A N/A N/A N/A 0.824±0.00 N/A N/A N/A N/A N/A
ENST00000374018 3.394±0.00 N/A N/A 8.121±0.00 5.730±3.73 16.167±0.00 17.104±0.00 9.853±0.00 3.596±0.00 5.506±3.51 5.269±0.00 29.185±17.56 52.896±2.16 11.251±0.00
ENST00000474635 N/A N/A 4.996±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000258 CIL_000258_0001 CGP 6:34587288-34773794
CIL_000259 CIL_000259_0001 CGP 6:34757406-34883138

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000243 IEA commitment complex
GO:0000387 IEA:IDA spliceosomal snRNP assembly
GO:0000395 IEA mRNA 5'-splice site recognition
GO:0000398 IDA:IEA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003727 IDA single-stranded RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005685 IEA:IDA U1 snRNP
GO:0008270 IDA:IEA zinc ion binding
GO:0015030 IDA Cajal body
GO:0042803 IPI protein homodimerization activity
GO:0044822 IDA poly(A) RNA binding
GO:0071004 IEA U2-type prespliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009871 snrpc small nuclear ribonucleoprotein polypeptide C protein_coding Danio_rerio
ENSMUSG00000024217 Snrpc U1 small nuclear ribonucleoprotein C protein_coding Mus_musculus

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