C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U1 small nuclear ribonucleoprotein C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137581 Snrpc-002 ENSMUSG00000024217 10090 + 17:27840134-27851968 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLungOvaryPlacentaTestisENSMUST00000137581
Transcript ID Adipose Bladder Brain Breast Heart Lung Ovary Placenta Testis
ENSMUST00000137581 0.585±0.11 0.609±0.01 0.739±0.37 0.484±0.19 0.211±0.00 0.811±0.00 0.472±0.06 0.213±0.05 0.180±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000258 CIL_000258_0002 CGP 17:27751232-27851968
CIL_000259 CIL_000259_0002 CGP 17:27839974-27900040

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244520 SNRPC-001 protein_coding Homo_sapiens 0 414
ENST00000374017 SNRPC-002 protein_coding Homo_sapiens 0 414
ENST00000374018 SNRPC-003 protein_coding Homo_sapiens 0 416
ENST00000417250 SNRPCP9-001 processed_pseudogene Homo_sapiens 2e-23 111
ENST00000424055 SNRPCP15-001 processed_pseudogene Homo_sapiens 3e-16 88
ENST00000433292 SNRPCP1-001 processed_pseudogene Homo_sapiens 0 255
ENST00000474635 SNRPC-004 processed_transcript Homo_sapiens 0 418
ENST00000474888 SNRPCP3-001 processed_pseudogene Homo_sapiens 0 259
ENST00000481033 SNRPCP10-001 processed_pseudogene Homo_sapiens 2e-23 111
ENST00000492453 SNRPCP11-001 processed_pseudogene Homo_sapiens 7e-23 110
ENST00000504370 SNRPCP2-001 processed_pseudogene Homo_sapiens 0 363
ENST00000514820 SNRPCP8-001 processed_pseudogene Homo_sapiens 6e-24 113
ENST00000520330 SNRPCP17-001 processed_pseudogene Homo_sapiens 3e-17 92
ENST00000524498 SNRPCP14-001 processed_pseudogene Homo_sapiens 4e-20 100
ENST00000528310 SNRPCP6-001 processed_pseudogene Homo_sapiens 7e-18 94
ENST00000531775 SNRPCP5-001 processed_pseudogene Homo_sapiens 8e-22 106
ENST00000588011 SNRPCP20-001 processed_pseudogene Homo_sapiens 4e-20 100
ENST00000622868 RP11-90D4.4-001 processed_pseudogene Homo_sapiens 4e-25 117

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