C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC11 homolog C (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024516 Sec11c 10090 + 18:65800549-65817665 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025394 Sec11c-001 65800549-65817665 protein_coding
  ENSMUST00000125552 Sec11c-006 65806575-65817660 processed_transcript
  ENSMUST00000126432 Sec11c-002 65800550-65817656 nonsense_mediated_decay
  ENSMUST00000126651 Sec11c-007 65814014-65817660 processed_transcript
  ENSMUST00000139538 Sec11c-003 65800603-65817657 retained_intron
  ENSMUST00000153193 Sec11c-004 65800572-65812728 protein_coding
  ENSMUST00000155668 Sec11c-005 65801302-65812778 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025394ENSMUST00000125552ENSMUST00000126432ENSMUST00000126651ENSMUST00000139538
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025394 9.580±4.19 11.843±4.56 26.551±4.27 23.919±17.80 15.508±5.28 56.039±10.81 6.599±0.57 13.234±1.47 21.422±8.56 19.349±3.22 13.156±1.36 13.585±5.98 42.153±13.99 6.941±0.81
ENSMUST00000125552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.829±0.88 N/A N/A
ENSMUST00000126432 4.263±0.00 4.179±0.59 N/A N/A 3.573±0.48 N/A N/A 4.247±0.00 2.061±0.00 N/A N/A 9.184±0.00 N/A N/A
ENSMUST00000126651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.339±0.00
ENSMUST00000139538 1.779±0.68 0.676±0.13 3.780±0.09 2.332±0.20 2.364±0.58 3.553±0.36 0.564±0.16 0.712±0.16 1.801±0.89 2.485±0.42 1.456±0.14 1.488±1.09 2.179±0.67 0.352±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086L CIL_00086L_0002 VISTA 18:65229356-65832579
CIL_0006O6 CIL_0006O6_0002 CGP 18:65800549-65886579

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0008236 IEA serine-type peptidase activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000166562 SEC11C SEC11 homolog C (S. cerevisiae) protein_coding Homo_sapiens

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