C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog C (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025394 Sec11c-001 ENSMUSG00000024516 10090 + 18:65800549-65817665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025394
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025394 9.580±4.19 11.843±4.56 26.551±4.27 23.919±17.80 15.508±5.28 56.039±10.81 6.599±0.57 13.234±1.47 21.422±8.56 19.349±3.22 13.156±1.36 13.585±5.98 42.153±13.99 6.941±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086L CIL_00086L_0002 VISTA 18:65229356-65832579
CIL_0006O6 CIL_0006O6_0002 CGP 18:65800549-65886579

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0008236 IEA serine-type peptidase activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299714 SEC11C-007 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000509791 SEC11C-005 protein_coding Homo_sapiens 0 704
ENST00000585864 SEC11C-004 retained_intron Homo_sapiens 0 505
ENST00000587834 SEC11C-001 protein_coding Homo_sapiens 0 1070
ENST00000588875 SEC11C-006 protein_coding Homo_sapiens 0 673
ENST00000591406 SEC11C-008 retained_intron Homo_sapiens 0 545

Loading